View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4109_high_3 (Length: 326)
Name: NF4109_high_3
Description: NF4109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4109_high_3 |
 | |
|
| [»] scaffold0470 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 61 - 304
Target Start/End: Complemental strand, 10091536 - 10091282
Alignment:
| Q |
61 |
ttaactaccgtttgacactttaaatcagctaaattactttttaattcagtttaaaaatctctccgaacaagagttaatcatcgttggaggtattttggat |
160 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
10091536 |
ttaactaccgtttgacactttaaatcagctaaattactttttaattcagtttaaaaatctctcctaacaagagttaatcatcgttggaggtattttggat |
10091437 |
T |
|
| Q |
161 |
aatttgaggtgcatgatagcaattggtaggtgcttaaagagcaacttccttacaagtttatggtgcatggcccatttc-----------agttctacatg |
249 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |
|
|
| T |
10091436 |
aatttgaggtgcatgatagcaattggtaggtgcttaaagagcaacttccttacaagtttatggtgcatggcccatttcagttacatgttagttctacagg |
10091337 |
T |
|
| Q |
250 |
actcactttctacatgcctgattttgattgttgtttttcccactctactggtttc |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10091336 |
actcactttctacatgcctgattttgattgttgtttttcccactctactggtttc |
10091282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 10091629 - 10091558
Alignment:
| Q |
1 |
aagttggggattgctctctaggcactcaacaatttctcacaaaaacctattgaatggcaattaactaccgtt |
72 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10091629 |
aagttggggattgctctctaggcactcaacaatttctcacaaaaacctattgaatggcaattaactaccgtt |
10091558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 149 - 204
Target Start/End: Original strand, 6613545 - 6613600
Alignment:
| Q |
149 |
ggtattttggataatttgaggtgcatgatagcaattggtaggtgcttaaagagcaa |
204 |
Q |
| |
|
|||||||||||||| ||||||||||| | |||||||| ||||||| ||| |||||| |
|
|
| T |
6613545 |
ggtattttggataacttgaggtgcataagagcaattgataggtgcctaacgagcaa |
6613600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0470 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0470
Description:
Target: scaffold0470; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 149 - 204
Target Start/End: Original strand, 2833 - 2888
Alignment:
| Q |
149 |
ggtattttggataatttgaggtgcatgatagcaattggtaggtgcttaaagagcaa |
204 |
Q |
| |
|
|||||||||||||| ||||||||||| | |||||||| ||||||| ||| |||||| |
|
|
| T |
2833 |
ggtattttggataacttgaggtgcataagagcaattgataggtgcctaacgagcaa |
2888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 207
Target Start/End: Original strand, 31508471 - 31508511
Alignment:
| Q |
167 |
aggtgcatgatagcaattggtaggtgcttaaagagcaactt |
207 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
31508471 |
aggtgcatgtaagcaattgttaggtgcttaaagagcaactt |
31508511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University