View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4109_low_5 (Length: 247)
Name: NF4109_low_5
Description: NF4109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4109_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 16253627 - 16253872
Alignment:
| Q |
1 |
tgtcacattgtatgactggatttttaacattttgatcaagttctggcgttgacttagcagcttcaagacctaattgtgtttcagtaggaagatgacattg |
100 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |
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| T |
16253627 |
tgtcacattgtatgactgaatttttaacattttgatcaagttctggcgttgacttagcagcttcaagacctaactgtgtttcagtaggatgatgacattg |
16253726 |
T |
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| Q |
101 |
atcttgctttgattttttccttttaccttttggcatttcattcttcaaagcaattctcaatttctgggaatcaatattcaaatcataatattaaatataa |
200 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16253727 |
atcttgctttgattttttccacttaccttttggcatttcattcttcaaagcaattctcaatttctgggaatcaatattcaaatcataatattaaatataa |
16253826 |
T |
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| Q |
201 |
attacaatttaaaatcacacnnnnnnnttactatagaataatctac |
246 |
Q |
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||||||||||||||| |||| ||||||||||||||||||| |
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| T |
16253827 |
attacaatttaaaataacacaaaaaaattactatagaataatctac |
16253872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 16248048 - 16248264
Alignment:
| Q |
1 |
tgtcacattgtatgactggatttttaacattttgatcaagttctggcgttgacttagcagcttcaagacctaattgtgtttcagtaggaagatgacattg |
100 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
16248048 |
tgtcacattgtatgactggagttttaacattttgatcaagttctggcgttgacttagcagcttcaagacctaattgtgtttcagcaggaagatgacatta |
16248147 |
T |
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| Q |
101 |
atcttgctttgattttttccttttaccttttggcatttcattcttcaaagcaattctcaatttctgggaatcaatattcaaatcataatattaaatataa |
200 |
Q |
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||| ||| ||||| |||||| ||||||||||||||||||||||| |||| || ||||||||| || ||||||||||||||||||||||||||||||||| |
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| T |
16248148 |
atcctgc-ttgatgttttccacttaccttttggcatttcattctttaaagtaagtctcaatttatgcgaatcaatattcaaatcataatattaaatataa |
16248246 |
T |
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| Q |
201 |
attacaatttaaaatcaca |
219 |
Q |
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||||||| ||||||||||| |
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| T |
16248247 |
attacaa-ttaaaatcaca |
16248264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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