View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4109_low_6 (Length: 241)
Name: NF4109_low_6
Description: NF4109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4109_low_6 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 9 - 241
Target Start/End: Original strand, 38260748 - 38260979
Alignment:
| Q |
9 |
gacatcatcatcaataacaacaagaacaacaacatgatgatgacaatgaatacttatgttgctgcttcttctcatcttgatctccatgtaggcttatcat |
108 |
Q |
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| T |
38260748 |
gacatcatcatcaataacaacaagaataacaacatgatgatgacaatgaatacttatgttgctgcttcttctcatcttgatctccatgtaggcttatcat |
38260847 |
T |
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| Q |
109 |
cacaatcacaagaactgccttctcaaacaattaatatttcagttgctgatgttggggatgttaacaagaacgatatgagaaagaagaagaagagaaatga |
208 |
Q |
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| T |
38260848 |
cacaatcacaagaactgccttctcaaacaattaatatttcagttgctgatgtt-gggatgttaacaagaacgatatgagaaagaagaagaagagaaatga |
38260946 |
T |
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| Q |
209 |
aaatattaatgatggaagaatccacagcctacc |
241 |
Q |
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| T |
38260947 |
aaatattaatgatggaagaatccacagcctacc |
38260979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 26 - 241
Target Start/End: Original strand, 38244467 - 38244679
Alignment:
| Q |
26 |
caacaagaacaacaacatgatgatgacaatgaatacttatgttgctgcttcttctcatcttgatctccatgtaggcttatcatcacaatcacaagaactg |
125 |
Q |
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| T |
38244467 |
caacaacaacaacaacaagatgatgaaaatgaatacttcta---ctacttcttctcatcttgatcttcatgtaggcttatcatcacaactacaagaactg |
38244563 |
T |
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| Q |
126 |
ccttctcaaacaattaatatttcagttgctgatgttggggatgttaacaagaacgatatgagaaagaagaagaagagaaatgaaaatattaatgatggaa |
225 |
Q |
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| T |
38244564 |
ccttctcaaactatcaatttatttgttactgatgttagggatattaacaagaatgataaaaggaagaagaagaagagcaatgaaaatatcgatgatggta |
38244663 |
T |
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| Q |
226 |
gaatccacagcctacc |
241 |
Q |
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| T |
38244664 |
aaattcacagcctacc |
38244679 |
T |
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