View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4109_low_7 (Length: 239)

Name: NF4109_low_7
Description: NF4109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4109_low_7
NF4109_low_7
[»] chr2 (16 HSPs)
chr2 (60-239)||(41435577-41435761)
chr2 (98-239)||(11964191-11964337)
chr2 (100-239)||(22066384-22066528)
chr2 (98-239)||(10448759-10448905)
chr2 (101-238)||(21345090-21345230)
chr2 (97-239)||(39778657-39778805)
chr2 (60-239)||(13693498-13693682)
chr2 (95-225)||(7105608-7105743)
chr2 (95-239)||(10728296-10728446)
chr2 (97-239)||(25186978-25187126)
chr2 (96-239)||(36191580-36191728)
chr2 (60-239)||(42993774-42993958)
chr2 (97-226)||(10700229-10700364)
chr2 (96-239)||(28830998-28831147)
chr2 (95-239)||(19926790-19926938)
chr2 (171-239)||(41462706-41462775)
[»] chr7 (10 HSPs)
chr7 (98-239)||(24989754-24989900)
chr7 (108-231)||(8417707-8417835)
chr7 (95-225)||(7568182-7568317)
chr7 (98-217)||(45062518-45062642)
chr7 (97-226)||(23319981-23320116)
chr7 (97-226)||(48390325-48390460)
chr7 (95-231)||(18674552-18674693)
chr7 (98-214)||(41851021-41851142)
chr7 (95-231)||(48394166-48394306)
chr7 (134-166)||(965166-965198)
[»] chr4 (10 HSPs)
chr4 (98-239)||(43034136-43034282)
chr4 (100-239)||(50150325-50150469)
chr4 (95-231)||(30537634-30537775)
chr4 (96-239)||(26877203-26877352)
chr4 (97-231)||(782841-782981)
chr4 (97-239)||(36187359-36187507)
chr4 (97-239)||(27627793-27627939)
chr4 (95-231)||(3067776-3067917)
chr4 (96-231)||(25934389-25934528)
chr4 (95-223)||(33313287-33313420)
[»] chr3 (14 HSPs)
chr3 (98-239)||(54748031-54748177)
chr3 (98-239)||(25095993-25096139)
chr3 (98-239)||(26848166-26848312)
chr3 (97-239)||(50834047-50834195)
chr3 (97-239)||(50841658-50841806)
chr3 (95-225)||(48905637-48905772)
chr3 (97-239)||(35613024-35613172)
chr3 (98-239)||(25313404-25313551)
chr3 (107-237)||(22515681-22515817)
chr3 (95-225)||(9663909-9664041)
chr3 (96-204)||(23026290-23026403)
chr3 (104-239)||(46320474-46320615)
chr3 (58-226)||(49794923-49795096)
chr3 (98-239)||(20922780-20922927)
[»] chr8 (10 HSPs)
chr8 (60-231)||(8669782-8669958)
chr8 (98-239)||(13882126-13882271)
chr8 (101-239)||(29226317-29226459)
chr8 (97-239)||(32305748-32305896)
chr8 (61-239)||(8106934-8107117)
chr8 (97-226)||(35634796-35634931)
chr8 (98-239)||(37533807-37533953)
chr8 (98-166)||(42570021-42570089)
chr8 (112-166)||(36741715-36741769)
chr8 (134-166)||(31598690-31598722)
[»] chr5 (7 HSPs)
chr5 (101-239)||(21262907-21263050)
chr5 (95-237)||(33314371-33314518)
chr5 (60-239)||(41174628-41174813)
chr5 (97-239)||(40385240-40385390)
chr5 (104-226)||(24868520-24868648)
chr5 (97-231)||(3097556-3097695)
chr5 (98-166)||(4237971-4238039)
[»] chr1 (20 HSPs)
chr1 (102-239)||(35050315-35050457)
chr1 (101-232)||(1553763-1553900)
chr1 (60-239)||(27332907-27333091)
chr1 (95-239)||(5800440-5800589)
chr1 (97-232)||(16130519-16130660)
chr1 (60-226)||(30222746-30222917)
chr1 (97-232)||(16129969-16130110)
chr1 (60-239)||(45192541-45192725)
chr1 (104-239)||(9411768-9411909)
chr1 (98-239)||(40988075-40988220)
chr1 (104-239)||(27654646-27654785)
chr1 (171-239)||(35121211-35121279)
chr1 (95-226)||(36834289-36834421)
chr1 (97-166)||(4813757-4813826)
chr1 (98-168)||(35428417-35428491)
chr1 (95-159)||(34546773-34546837)
chr1 (97-166)||(27846454-27846523)
chr1 (95-194)||(13879058-13879161)
chr1 (97-230)||(11907927-11908064)
chr1 (95-159)||(23933321-23933386)
[»] chr6 (3 HSPs)
chr6 (97-232)||(1365692-1365833)
chr6 (97-239)||(24338017-24338165)
chr6 (97-226)||(7243421-7243556)
[»] scaffold0067 (1 HSPs)
scaffold0067 (98-226)||(6756-6890)
[»] scaffold0008 (1 HSPs)
scaffold0008 (134-239)||(258358-258469)
[»] scaffold0057 (2 HSPs)
scaffold0057 (101-166)||(30529-30594)
scaffold0057 (101-166)||(30839-30900)


Alignment Details
Target: chr2 (Bit Score: 97; Significance: 8e-48; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 60 - 239
Target Start/End: Original strand, 41435577 - 41435761
Alignment:
Q  60 atcttcatttaatatacttctatatttnnnnnnnnttcatgaatacccttaaattaattactcttcatttcatcaacttacttacttttaatattctctc 159  Q
    |||||||||||||| ||||||| ||||        |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||    
T  41435577 atcttcatttaatacacttctacatttaattttttttcatgaatacccttaaattaattactctttatttcatcaacttatttacttttaatattctatc 41435676  T
Q  160 tcataatca-----gacacaaatgaaatttagcttgaaacatacttgaaacttgctcaatcttcttataaaatggaccgaaaaaa 239  Q
    |||||||||     | ||||||||||||||||||| |||||||||||||||||| |||||||| |||||||| ||||| ||||||    
T  41435677 tcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaatcttattataaaaaggaccaaaaaaa 41435761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 98 - 239
Target Start/End: Complemental strand, 11964337 - 11964191
Alignment:
Q  98 atgaatacccttaaattaattactcttcatttcatcaacttacttacttttaatattctctctcataatca-----gacacaaatgaaatttagcttgaa 192  Q
    ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||     | ||||||||||||||||||| ||    
T  11964337 atgaatacccttaaattaattactctttattccatcaacttacttacttttaatattctctctcataatcaataagggcacaaatgaaatttagcttcaa 11964238  T
Q  193 acatacttgaaacttgctcaatcttcttataaaatggaccgaaaaaa 239  Q
    ||||| |||||||||| ||||||||||||||||| ||||| ||||||    
T  11964237 acatatttgaaacttgatcaatcttcttataaaaaggaccaaaaaaa 11964191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 100 - 239
Target Start/End: Original strand, 22066384 - 22066528
Alignment:
Q  100 gaatacccttaaattaattactcttcatttcatcaacttacttacttttaatattctctctcataatca-----gacacaaatgaaatttagcttgaaac 194  Q
    |||||||||||||||||||||| || ||| |||||||| ||||||||||||||||||||||||||||||     | ||||||||||||||||||| ||||    
T  22066384 gaatacccttaaattaattactttttattccatcaactaacttacttttaatattctctctcataatcaataagggcacaaatgaaatttagctttaaac 22066483  T
Q  195 atacttgaaacttgctcaatcttcttataaaatggaccgaaaaaa 239  Q
    |||||||||||||| ||||||||||||||||| ||||| ||||||    
T  22066484 atacttgaaacttgatcaatcttcttataaaaaggaccaaaaaaa 22066528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 98 - 239
Target Start/End: Complemental strand, 10448905 - 10448759
Alignment:
Q  98 atgaatacccttaaattaattactcttcatttcatcaacttacttacttttaatattctctctcataatc----aga-cacaaatgaaatttagcttgaa 192  Q
    |||||||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||    ||| ||||||||||||||| ||| ||    
T  10448905 atgaatacccttaaattaattactatttattccatcaacttacttacttttaatattctctctcataatcaataagagcacaaatgaaatttaacttcaa 10448806  T
Q  193 acatacttgaaacttgctcaatcttcttataaaatggaccgaaaaaa 239  Q
    |||||||||||||||| ||||||||||||||||  ||||| ||||||    
T  10448805 acatacttgaaacttgatcaatcttcttataaagaggaccaaaaaaa 10448759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 101 - 238
Target Start/End: Original strand, 21345090 - 21345230
Alignment:
Q  101 aatacccttaaattaattactcttcatttcatcaacttacttacttttaatattctctctcataatca-----gacacaaatgaaatttagcttgaaaca 195  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||||||||  ||||||||| |||||     ||||||||||||||||||||| |||||    
T  21345090 aatacccttaaattaattactctttattccatcaacttacttacttttaat--tctctctcacaatcaataaggacacaaatgaaatttagcttcaaaca 21345187  T
Q  196 tacttgaaacttgctcaatcttcttataaaatggaccgaaaaa 238  Q
    ||||||||||||| ||||||||||||||||| ||||| |||||    
T  21345188 tacttgaaacttgatcaatcttcttataaaaaggaccaaaaaa 21345230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 97 - 239
Target Start/End: Original strand, 39778657 - 39778805
Alignment:
Q  97 catgaatacccttaaattaattactcttcatttcatcaacttacttacttttaatattctctctcataatca-----gacacaaatgaaatttagcttga 191  Q
    |||||||||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||| |     | ||||||||||||||||||| |    
T  39778657 catgaatacccttaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataagggcacaaatgaaatttagcttca 39778756  T
Q  192 aacatacttgaaacttgctcaat-cttcttataaaatggaccgaaaaaa 239  Q
    ||||||||||||||||| |||||  ||||||||||| ||||| ||||||    
T  39778757 aacatacttgaaacttggtcaatatttcttataaaaaggaccaaaaaaa 39778805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 60 - 239
Target Start/End: Original strand, 13693498 - 13693682
Alignment:
Q  60 atcttcatttaatatacttctatatttnnnnnnnnttcatgaatacccttaaattaattactcttcatttcatcaacttacttacttttaatattctctc 159  Q
    |||||||||||||| ||||||||||||        ||||||||||||| |||||||||| ||||| ||| ||  |||||| ||||||||||| |||||||    
T  13693498 atcttcatttaatacacttctatatttaaaaaatattcatgaatacccctaaattaattcctctttattccactaacttatttacttttaattttctctc 13693597  T
Q  160 tcataatca-----gacacaaatgaaatttagcttgaaacatacttgaaacttgctcaatcttcttataaaatggaccgaaaaaa 239  Q
    ||||||| |     |||| |||||||||||| ||| |||||||||||||||||| ||||||||||||||||| ||||| ||||||    
T  13693598 tcataataaataaggacagaaatgaaatttatctttaaacatacttgaaacttggtcaatcttcttataaaaaggaccaaaaaaa 13693682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 95 - 225
Target Start/End: Complemental strand, 7105743 - 7105608
Alignment:
Q  95 ttcatgaatacccttaaattaattactcttcatttcatcaacttacttacttttaatattctctctcataatca-----gacacaaatgaaatttagctt 189  Q
    ||||||||||||| |||||||||||||||| ||| || |||||||||||||||||||||| ||||||||||| |     | ||||||||||||||| |||    
T  7105743 ttcatgaatacccctaaattaattactctttattccaccaacttacttacttttaatattttctctcataataaataagggcacaaatgaaatttacctt 7105644  T
Q  190 gaaacatacttgaaacttgctcaatcttcttataaa 225  Q
     || ||||||||||||||| ||||||||||||||||    
T  7105643 caagcatacttgaaacttggtcaatcttcttataaa 7105608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 95 - 239
Target Start/End: Original strand, 10728296 - 10728446
Alignment:
Q  95 ttcatgaatacccttaaattaattactcttcatttcatcaacttacttacttttaatattctctctcataatca-----gacacaaatgaaatttagctt 189  Q
    ||||||||||||| |||||||||||||||| ||| || |||||||||||||||||||||||||||||||||| |     | || ||||||||||||||||    
T  10728296 ttcatgaatacccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataagggcataaatgaaatttagctt 10728395  T
Q  190 gaaacatacttgaaacttgctcaat-cttcttataaaatggaccgaaaaaa 239  Q
     |||||||||||||||||  |||||  ||||||||||| ||||| ||||||    
T  10728396 caaacatacttgaaactttgtcaatatttcttataaaaaggaccaaaaaaa 10728446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 97 - 239
Target Start/End: Complemental strand, 25187126 - 25186978
Alignment:
Q  97 catgaatacccttaaattaattactcttcatttcatcaacttacttacttttaatattctctctcataatca-----gacacaaatgaaatttagcttga 191  Q
    |||||||| ||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||| |     | ||||||||||||||||||| |    
T  25187126 catgaatatccttaaattaattactcttaattccaccaacttacttacttttaatattctctctcataataaataagggcacaaatgaaatttagcttca 25187027  T
Q  192 aacatacttgaaacttgctcaat-cttcttataaaatggaccgaaaaaa 239  Q
     |||||||||||||||| |||||  |||||||||||  |||| ||||||    
T  25187026 gacatacttgaaacttggtcaatatttcttataaaaatgaccaaaaaaa 25186978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 96 - 239
Target Start/End: Original strand, 36191580 - 36191728
Alignment:
Q  96 tcatgaatacccttaaattaattactcttcatttcatcaacttacttacttttaatattctctctcataatca-----gacacaaatgaaatttagcttg 190  Q
    |||| ||||||| |||||||||||||||| ||| || |||||||||||||||||||||||||||||||||| |     | |||||||||||||||||||     
T  36191580 tcattaatacccctaaattaattactctttattcca-caacttacttacttttaatattctctctcataataaataagggcacaaatgaaatttagcttc 36191678  T
Q  191 aaacatacttgaaacttgctcaat-cttcttataaaatggaccgaaaaaa 239  Q
    |||||||||||||||||  |||||  ||||||||||| ||||| ||||||    
T  36191679 aaacatacttgaaacttagtcaatatttcttataaaaaggaccaaaaaaa 36191728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 60 - 239
Target Start/End: Original strand, 42993774 - 42993958
Alignment:
Q  60 atcttcatttaatatacttctatatttnnnnnnnnttcatgaatacccttaaattaattactcttcatttcatcaacttacttacttttaatattctctc 159  Q
    |||||||||||||| ||||||||||||        | ||||||||||| |||||||||| ||||| ||| ||  |||||| ||||||||||| |||||||    
T  42993774 atcttcatttaatacacttctatatttaaataaaatccatgaatacccctaaattaattcctctttattccactaacttatttacttttaattttctctc 42993873  T
Q  160 tcataatca-----gacacaaatgaaatttagcttgaaacatacttgaaacttgctcaatcttcttataaaatggaccgaaaaaa 239  Q
    ||||||  |     | ||||||||||||||| ||| |||||||||||||| ||| ||||||||||||||||| ||||| ||||||    
T  42993874 tcataacaaataagggcacaaatgaaatttatcttcaaacatacttgaaatttggtcaatcttcttataaaaaggaccaaaaaaa 42993958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 97 - 226
Target Start/End: Original strand, 10700229 - 10700364
Alignment:
Q  97 catgaatacccttaaattaattactcttcatttcatcaacttacttacttttaatattctctctcataatca-----gacacaaatgaaatttagcttga 191  Q
    ||||||||||| |||||||||||||||| ||| || ||||||| |||||||||||||||||||||||||| |     | ||||||||||||||||||| |    
T  10700229 catgaatacccctaaattaattactctttattccaccaacttatttacttttaatattctctctcataataagtaagggcacaaatgaaatttagcttca 10700328  T
Q  192 aacatacttgaaacttgctcaat-cttcttataaaa 226  Q
     |||||||||||||||| |||||  |||||||||||    
T  10700329 gacatacttgaaacttggtcaatatttcttataaaa 10700364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 96 - 239
Target Start/End: Complemental strand, 28831147 - 28830998
Alignment:
Q  96 tcatgaatacccttaaattaattactcttcatttcatcaacttacttacttttaatattctctctcataatca-----gacacaaatgaaatttagcttg 190  Q
    |||||||||||| |||||||||||||||| ||| || ||| |||||||||||||||||| ||||||||||| |     ||||||||||||||||| |||     
T  28831147 tcatgaatacccctaaattaattactctttattgcaccaatttacttacttttaatattttctctcataataaataaggacacaaatgaaatttaacttc 28831048  T
Q  191 aaacatacttgaaacttgctcaat-cttcttataaaatggaccgaaaaaa 239  Q
    |||||||||| ||| ||| |||||  ||||||||||| ||||| ||||||    
T  28831047 aaacatacttaaaatttggtcaatatttcttataaaaaggaccaaaaaaa 28830998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 95 - 239
Target Start/End: Original strand, 19926790 - 19926938
Alignment:
Q  95 ttcatgaatacccttaaattaattactcttcatttcatcaacttacttacttttaatattctctc-tcataatca--gacacaaatgaaatttagcttga 191  Q
    |||| |||||||| |||||||||||||||| ||| || ||||||||||||||||||||||||||| | ||||  |  | |||||||||||||||| || |    
T  19926790 ttcaagaatacccctaaattaattactctttattccaccaacttacttacttttaatattctctcataataaataagggcacaaatgaaatttagtttca 19926889  T
Q  192 aacatacttgaaacttgctcaat-cttcttataaaatggaccgaaaaaa 239  Q
    ||||||||| ||||||| |||||  ||||||||||| ||||| ||||||    
T  19926890 aacatacttaaaacttggtcaatatttcttataaaaaggaccaaaaaaa 19926938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 239
Target Start/End: Complemental strand, 41462775 - 41462706
Alignment:
Q  171 cacaaatgaaatttagcttgaaacatacttgaaacttgctcaat-cttcttataaaatggaccgaaaaaa 239  Q
    ||||||||||||||| ||| ||||||| || ||||||| |||||  ||||||||||| ||||| ||||||    
T  41462775 cacaaatgaaatttaacttcaaacatatttaaaacttggtcaatatttcttataaaaaggacctaaaaaa 41462706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 95; Significance: 1e-46; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 98 - 239
Target Start/End: Complemental strand, 24989900 - 24989754
Alignment:
Q  98 atgaatacccttaaattaattactcttcatttcatcaacttacttacttttaatattctctctcataatca-----gacacaaatgaaatttagcttgaa 192  Q
    ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||     | ||||||||||||||||||| ||    
T  24989900 atgaatacccttaaattaattactctttattccatcaacttacttacttttaatattctctctcataatcaataagggcacaaatgaaatttagcttcaa 24989801  T
Q  193 acatacttgaaacttgctcaatcttcttataaaatggaccgaaaaaa 239  Q
    |||||||||||||||| |||||||||| |||||| ||||| ||||||    
T  24989800 acatacttgaaacttgatcaatcttctaataaaaaggaccaaaaaaa 24989754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 108 - 231
Target Start/End: Complemental strand, 8417835 - 8417707
Alignment:
Q  108 ttaaattaattactcttcatttcatcaacttacttacttttaatattctctctcataatca-----gacacaaatgaaatttagcttgaaacatacttga 202  Q
    ||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||| |     | ||||||||||||||||||| ||||||||||||    
T  8417835 ttaaattaattactctttattccatcaacttacttacttttaatattatctctcataattaataagggcacaaatgaaatttagcttcaaacatacttga 8417736  T
Q  203 aacttgctcaatcttcttataaaatggac 231  Q
    |||||| ||||||||||||||||| ||||    
T  8417735 aacttgatcaatcttcttataaaaaggac 8417707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 95 - 225
Target Start/End: Original strand, 7568182 - 7568317
Alignment:
Q  95 ttcatgaatacccttaaattaattactcttcatttcatcaacttacttacttttaatattctctctcataatca-----gacacaaatgaaatttagctt 189  Q
    ||||||||||||| |||||||||||||||| ||| || |||||||||||||||||||||||||| ||||||| |     | ||||||||||||||| |||    
T  7568182 ttcatgaatacccctaaattaattactctttattccaccaacttacttacttttaatattctctttcataataaataagggcacaaatgaaatttacctt 7568281  T
Q  190 gaaacatacttgaaacttgctcaatcttcttataaa 225  Q
     |||||||||||||||||| ||||||||||||||||    
T  7568282 caaacatacttgaaacttgatcaatcttcttataaa 7568317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 98 - 217
Target Start/End: Complemental strand, 45062642 - 45062518
Alignment:
Q  98 atgaatacccttaaattaattactcttcatttcatcaacttacttacttttaatattctctctcataatca-----gacacaaatgaaatttagcttgaa 192  Q
    |||||||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||||||||||     | |||| |||||||||||||| ||    
T  45062642 atgaatacccttaaattaattactttttattccatcaacttacttacttttaatattctctctcataatcaacaagggcacagatgaaatttagctttaa 45062543  T
Q  193 acatacttgaaacttgctcaatctt 217  Q
    ||||| |||||||||| ||||||||    
T  45062542 acatatttgaaacttgatcaatctt 45062518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 97 - 226
Target Start/End: Original strand, 23319981 - 23320116
Alignment:
Q  97 catgaatacccttaaattaattactcttcatttcatcaacttacttacttttaatattctctctcataatca-----gacacaaatgaaatttagcttga 191  Q
    ||||||||||| |||||||||||||||| ||| || |||||||||||||||||||||||||||||||||| |     | ||||||||||||||||||| |    
T  23319981 catgaatacccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataagggcacaaatgaaatttagcttca 23320080  T
Q  192 aacatacttgaaacttgctcaat-cttcttataaaa 226  Q
    ||||||||||||||||| |||||  |||||||||||    
T  23320081 aacatacttgaaacttggtcaatatttcttataaaa 23320116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 97 - 226
Target Start/End: Original strand, 48390325 - 48390460
Alignment:
Q  97 catgaatacccttaaattaattactcttcatttcatcaacttacttacttttaatattctctctcataatca-----gacacaaatgaaatttagcttga 191  Q
    ||||||||||| ||||||||||| | || |||||||||||||||||||||||||||||||| |||||||| |     ||||||||||||||||||||| |    
T  48390325 catgaatacccctaaattaattattttttatttcatcaacttacttacttttaatattctcactcataataaataaggacacaaatgaaatttagcttca 48390424  T
Q  192 aacatacttgaaacttgctcaat-cttcttataaaa 226  Q
    ||||||||||||||||| |||||  |||||||||||    
T  48390425 aacatacttgaaacttggtcaatatttcttataaaa 48390460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 95 - 231
Target Start/End: Complemental strand, 18674693 - 18674552
Alignment:
Q  95 ttcatgaatacccttaaattaattactcttcatttcatcaacttacttacttttaatattctctctcataatca-----gacacaaatgaaatttagctt 189  Q
    ||||||||||||| |||||||||||||||| ||| || ||||||||||| ||| |||||||||||| ||||| |     | |||||||||||||||||||    
T  18674693 ttcatgaatacccctaaattaattactctttattccaccaacttacttattttcaatattctctcttataataaataagggcacaaatgaaatttagctt 18674594  T
Q  190 gaaacatacttgaaacttgctcaatcttcttataaaatggac 231  Q
     |||||||||||||||||| ||||| ||||||||||| ||||    
T  18674593 caaacatacttgaaacttggtcaattttcttataaaaaggac 18674552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 98 - 214
Target Start/End: Original strand, 41851021 - 41851142
Alignment:
Q  98 atgaatacccttaaattaattactcttcatttcatcaacttacttacttttaatattctctctcataatca-----gacacaaatgaaatttagcttgaa 192  Q
    |||||||||| |||||||||||||||| ||| || ||||| |||||||||||||||||||||||||||| |     |  ||||||||||||||| || ||    
T  41851021 atgaatacccctaaattaattactctttattccaccaactcacttacttttaatattctctctcataataaataagggtacaaatgaaatttagtttcaa 41851120  T
Q  193 acatacttgaaacttgctcaat 214  Q
    |||||||||||||||| |||||    
T  41851121 acatacttgaaacttggtcaat 41851142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 95 - 231
Target Start/End: Original strand, 48394166 - 48394306
Alignment:
Q  95 ttcatgaatacccttaaattaattactcttcatttcatcaacttacttacttttaatattctctc-tcataatca--gacacaaatgaaatttagcttga 191  Q
    |||| |||||||| |||||||||||||||| ||| || |||||||||||||||||||||||| || | ||||  |  | |||||||||||||||| || |    
T  48394166 ttcaagaatacccctaaattaattactctttattccaccaacttacttacttttaatattctttcataataaataagggcacaaatgaaatttagtttca 48394265  T
Q  192 aacatacttgaaacttgctcaat-cttcttataaaatggac 231  Q
    ||||||||| ||||||| |||||  ||||||||||| ||||    
T  48394266 aacatacttaaaacttggtcaatatttcttataaaaaggac 48394306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 166
Target Start/End: Original strand, 965166 - 965198
Alignment:
Q  134 aacttacttacttttaatattctctctcataat 166  Q
    ||||||||||||||||||||||| |||||||||    
T  965166 aacttacttacttttaatattctttctcataat 965198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 95; Significance: 1e-46; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 98 - 239
Target Start/End: Original strand, 43034136 - 43034282
Alignment:
Q  98 atgaatacccttaaattaattactcttcatttcatcaacttacttacttttaatattctctctcataatca-----gacacaaatgaaatttagcttgaa 192  Q
    ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||     | ||||||||||||||||||| ||    
T  43034136 atgaatacccttaaattaattactctttattccatcaacttacttacttttaatattctctctcataatcaataagggcacaaatgaaatttagcttcaa 43034235  T
Q  193 acatacttgaaacttgctcaatcttcttataaaatggaccgaaaaaa 239  Q
    ||||| |||||||||| ||||||||||||||||| ||||| ||||||    
T  43034236 acatatttgaaacttgatcaatcttcttataaaaaggaccaaaaaaa 43034282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 100 - 239
Target Start/End: Original strand, 50150325 - 50150469
Alignment:
Q  100 gaatacccttaaattaattactcttcatttcatcaacttacttacttttaatattctctctcataatca-----gacacaaatgaaatttagcttgaaac 194  Q
    |||||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||| ||||    
T  50150325 gaatacccttaaattaattactttttattccatcaacttacttacttttaatattctctctcataatcaataaggacacaaatgaaatttagcttcaaac 50150424  T
Q  195 atacttgaaacttgctcaatcttcttataaaatggaccgaaaaaa 239  Q
    |||||| ||||||| ||||||||||||||||| ||||| ||||||    
T  50150425 atacttaaaacttgatcaatcttcttataaaaaggaccaaaaaaa 50150469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 95 - 231
Target Start/End: Original strand, 30537634 - 30537775
Alignment:
Q  95 ttcatgaatacccttaaattaattactcttcatttcatcaacttacttacttttaatattctctctcataatca-----gacacaaatgaaatttagctt 189  Q
    ||||||||||||| |||||||||||||||| ||| || |||||||||||||||||||||||||||||||||| |     | |||||||||||||||||||    
T  30537634 ttcatgaatacccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataagggcacaaatgaaatttagctt 30537733  T
Q  190 gaaacatacttgaaacttgctcaatcttcttataaaatggac 231  Q
     |||||||||||||||||| ||||||||||||||||| ||||    
T  30537734 caaacatacttgaaacttggtcaatcttcttataaaaaggac 30537775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 96 - 239
Target Start/End: Complemental strand, 26877352 - 26877203
Alignment:
Q  96 tcatgaatacccttaaattaattactcttcatttcatcaacttacttacttttaatattctctctcataatca-----gacacaaatgaaatttagcttg 190  Q
    |||||||||||| |||||||||||||||| ||| || |||||||||||||||||||||||| ||||||||| |     |||||||||||||||||||||     
T  26877352 tcatgaatacccctaaattaattactctttattccaccaacttacttacttttaatattctatctcataataaataaggacacaaatgaaatttagcttc 26877253  T
Q  191 aaacatacttgaaacttgctcaat-cttcttataaaatggaccgaaaaaa 239  Q
    |||||||||| ||| ||| |||||  ||||||||||| ||||| ||||||    
T  26877252 aaacatacttaaaatttggtcaatatttcttataaaaaggaccaaaaaaa 26877203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 97 - 231
Target Start/End: Complemental strand, 782981 - 782841
Alignment:
Q  97 catgaatacccttaaattaattactcttcatttcatcaacttacttacttttaatattctctctcataatca-----gacacaaatgaaatttagcttga 191  Q
    ||||||||||| ||||||||||| |||| ||| || |||||||||||||||||||||||||||||||||| |     | |||||| |||||||||||| |    
T  782981 catgaatacccctaaattaattattctttattccaccaacttacttacttttaatattctctctcataataaataagggcacaaaagaaatttagcttca 782882  T
Q  192 aacatacttgaaacttgctcaat-cttcttataaaatggac 231  Q
    ||||||||||||||||| |||||  ||||||||||| ||||    
T  782881 aacatacttgaaacttggtcaatatttcttataaaaaggac 782841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 97 - 239
Target Start/End: Complemental strand, 36187507 - 36187359
Alignment:
Q  97 catgaatacccttaaattaattactcttcatttcatcaacttacttacttttaatattctctctcataatca-----gacacaaatgaaatttagcttga 191  Q
    ||||||||||| ||||||||||| |||| ||| || |||||||||||||||||||||||||||||||||| |     | ||||||||||||||||||| |    
T  36187507 catgaatacccctaaattaattattctttattccaccaacttacttacttttaatattctctctcataataaataagggcacaaatgaaatttagcttca 36187408  T
Q  192 aacatacttgaaacttgctcaat-cttcttataaaatggaccgaaaaaa 239  Q
    || |||||||||||||| | |||  ||||||||||| ||||| ||||||    
T  36187407 aatatacttgaaacttggttaatatttcttataaaaaggaccaaaaaaa 36187359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 97 - 239
Target Start/End: Complemental strand, 27627939 - 27627793
Alignment:
Q  97 catgaatacccttaaattaattactcttcatttcatcaacttacttacttttaatattctctc-tcataatca--gacacaaatgaaatttagcttgaaa 193  Q
    ||||||||||| |||||||||||||||| ||| || ||||||||||||||||||||||||||| | ||||  |  | ||||||||||||||||||| |||    
T  27627939 catgaatacccctaaattaattactctttattccaccaacttacttacttttaatattctctcataataaataagggcacaaatgaaatttagcttcaaa 27627840  T
Q  194 catacttgaaacttgctcaat-cttcttataaaatggaccgaaaaaa 239  Q
    ||||||||||||||| |||||  ||||||||||| ||| | ||||||    
T  27627839 catacttgaaacttggtcaatatttcttataaaaaggatcaaaaaaa 27627793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 95 - 231
Target Start/End: Complemental strand, 3067917 - 3067776
Alignment:
Q  95 ttcatgaatacccttaaattaattactcttcatttcatcaacttacttacttttaatattctctctcataatca-----gacacaaatgaaatttagctt 189  Q
    ||||||||||||  ||||||||||  |||| |||  |  |||||| ||||||||||| |||||||||||||| |     | |||||||||||||||||||    
T  3067917 ttcatgaatacctctaaattaattcttctttattctactaacttatttacttttaattttctctctcataataaataagggcacaaatgaaatttagctt 3067818  T
Q  190 gaaacatacttgaaacttgctcaatcttcttataaaatggac 231  Q
     |||||||||||||||||| ||||||||||||||||| ||||    
T  3067817 caaacatacttgaaacttggtcaatcttcttataaaaaggac 3067776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 96 - 231
Target Start/End: Complemental strand, 25934528 - 25934389
Alignment:
Q  96 tcatgaatacccttaaattaattactcttcatttcatcaacttacttacttttaatattctctctcataatca-----gacacaaatgaaatttagcttg 190  Q
    ||||||||||||| ||||||||| ||||| ||| ||  |||||| ||| ||||||| |||||||||||||| |     | ||||||||||||||| |||     
T  25934528 tcatgaataccct-aaattaattcctctttattccactaacttatttatttttaattttctctctcataataaataagggcacaaatgaaatttatcttc 25934430  T
Q  191 aaacatacttgaaacttgctcaatcttcttataaaatggac 231  Q
    |||||||||||||||||| ||||||||||||||||| ||||    
T  25934429 aaacatacttgaaacttggtcaatcttcttataaaaaggac 25934389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 95 - 223
Target Start/End: Complemental strand, 33313420 - 33313287
Alignment:
Q  95 ttcatgaatacccttaaattaattactcttcatttcatcaacttacttacttttaatattctctctcataatca-----gacacaaatgaaatttagctt 189  Q
    |||||||||| || ||||||||||  |||| ||| ||  |||||| ||||||||||| |||||||||||||| |     | ||||||| |||||||  ||    
T  33313420 ttcatgaatatccataaattaattcatctttattccactaacttatttacttttaattttctctctcataataaataagggcacaaataaaatttatatt 33313321  T
Q  190 gaaacatacttgaaacttgctcaatcttcttata 223  Q
     ||||||| || ||||||| | ||||||||||||    
T  33313320 taaacatatttaaaacttggttaatcttcttata 33313287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 95; Significance: 1e-46; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 98 - 239
Target Start/End: Complemental strand, 54748177 - 54748031
Alignment:
Q  98 atgaatacccttaaattaattactcttcatttcatcaacttacttacttttaatattctctctcataatca-----gacacaaatgaaatttagcttgaa 192  Q
    ||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||     | ||||||||||||||||||| ||    
T  54748177 atgaatacccttaaattaattactctttattccatcaatttacttacttttaatattctctctcataatcaataagggcacaaatgaaatttagcttcaa 54748078  T
Q  193 acatacttgaaacttgctcaatcttcttataaaatggaccgaaaaaa 239  Q
    |||||||||||||||| ||||||||||||||||| ||||| ||||||    
T  54748077 acatacttgaaacttgatcaatcttcttataaaaaggaccaaaaaaa 54748031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 98 - 239
Target Start/End: Original strand, 25095993 - 25096139
Alignment:
Q  98 atgaatacccttaaattaattactcttcatttcatcaacttacttacttttaatattctctctcataatca-----gacacaaatgaaatttagcttgaa 192  Q
    ||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||     | ||||||||||||||||||| ||    
T  25095993 atgaatacccttaaattaattactctttattccatcaatttacttacttttaatattctctctcataatcaataagggcacaaatgaaatttagcttcaa 25096092  T
Q  193 acatacttgaaacttgctcaatcttcttataaaatggaccgaaaaaa 239  Q
    |||||||||||| ||| ||||||||||||||||| ||||| ||||||    
T  25096093 acatacttgaaatttgatcaatcttcttataaaaaggaccaaaaaaa 25096139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 98 - 239
Target Start/End: Original strand, 26848166 - 26848312
Alignment:
Q  98 atgaatacccttaaattaattactcttcatttcatcaacttacttacttttaatattctctctcataatca-----gacacaaatgaaatttagcttgaa 192  Q
    ||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||     | |||||| |||||||||||| ||    
T  26848166 atgaacacccttaaattaattactctttattccatcaacttacttacttttaatattctctctcataatcaataagggcacaaaagaaatttagcttcaa 26848265  T
Q  193 acatacttgaaacttgctcaatcttcttataaaatggaccgaaaaaa 239  Q
    |||||||||||||||| |||||||||||||||||  |||| ||||||    
T  26848266 acatacttgaaacttgatcaatcttcttataaaaatgaccaaaaaaa 26848312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 97 - 239
Target Start/End: Complemental strand, 50834195 - 50834047
Alignment:
Q  97 catgaatacccttaaattaattactcttcatttcatcaacttacttacttttaatattctctctcataatca-----gacacaaatgaaatttagcttga 191  Q
    |||||||||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||| |     | ||||||||||||||||||| |    
T  50834195 catgaatacccttaaattaattactctttattccaccaacttacttacttttaatattctctctcataataagtaagggcacaaatgaaatttagcttca 50834096  T
Q  192 aacatacttgaaacttgctcaat-cttcttataaaatggaccgaaaaaa 239  Q
    ||||||||||||||||| |||||  ||||||||||| ||||| ||||||    
T  50834095 aacatacttgaaacttggtcaatatttcttataaaaaggaccaaaaaaa 50834047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 97 - 239
Target Start/End: Original strand, 50841658 - 50841806
Alignment:
Q  97 catgaatacccttaaattaattactcttcatttcatcaacttacttacttttaatattctctctcataatca-----gacacaaatgaaatttagcttga 191  Q
    |||||||||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||| |     | ||||||||||||||||||| |    
T  50841658 catgaatacccttaaattaattactctttattccaccaacttacttacttttaatattctctctcataataagtaagggcacaaatgaaatttagcttca 50841757  T
Q  192 aacatacttgaaacttgctcaat-cttcttataaaatggaccgaaaaaa 239  Q
    ||||||||||||||||| |||||  ||||||||||| ||||| ||||||    
T  50841758 aacatacttgaaacttggtcaatatttcttataaaaaggaccaaaaaaa 50841806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 95 - 225
Target Start/End: Original strand, 48905637 - 48905772
Alignment:
Q  95 ttcatgaatacccttaaattaattactcttcatttcatcaacttacttacttttaatattctctctcataatca-----gacacaaatgaaatttagctt 189  Q
    ||||||||||||| |||||||||||||||| ||| || |||||||||||||||||||||||||||||||||| |     | ||||||||||||||| |||    
T  48905637 ttcatgaatacccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataagggcacaaatgaaatttacctt 48905736  T
Q  190 gaaacatacttgaaacttgctcaatcttcttataaa 225  Q
     |||||||||||||||||| ||||||||||||||||    
T  48905737 caaacatacttgaaacttggtcaatcttcttataaa 48905772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 97 - 239
Target Start/End: Original strand, 35613024 - 35613172
Alignment:
Q  97 catgaatacccttaaattaattactcttcatttcatcaacttacttacttttaatattctctctcataatca-----gacacaaatgaaatttagcttga 191  Q
    ||||||||||| |||||||||||||||| ||| || ||||||| |||||||||||||||||||||||||| |     | ||||||||||||||||||| |    
T  35613024 catgaatacccctaaattaattactctttattccaccaacttatttacttttaatattctctctcataataaataagggcacaaatgaaatttagcttca 35613123  T
Q  192 aacatacttgaaacttgctcaat-cttcttataaaatggaccgaaaaaa 239  Q
    ||||||||||||||||| |||||  ||||||||||| ||||| ||||||    
T  35613124 aacatacttgaaacttggtcaatatttcttataaaaaggaccaaaaaaa 35613172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 98 - 239
Target Start/End: Complemental strand, 25313551 - 25313404
Alignment:
Q  98 atgaatacccttaaattaattactcttcatttcatcaacttacttacttttaatattctctctcataatca-----gacacaaatgaaatttagcttgaa 192  Q
    |||||||||| ||||||||||| |||| ||| || |||||||||||||||||||||||||||||||||| |     | ||||||||||||||||||| ||    
T  25313551 atgaatacccctaaattaattattctttattccaccaacttacttacttttaatattctctctcataataaataagggcacaaatgaaatttagcttcaa 25313452  T
Q  193 acatacttgaaacttgctcaat-cttcttataaaatggaccgaaaaaa 239  Q
    |||||||||||||||| |||||  ||||||||||| ||||| ||||||    
T  25313451 acatacttgaaacttggtcaatatttcttataaaaaggacccaaaaaa 25313404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 107 - 237
Target Start/End: Complemental strand, 22515817 - 22515681
Alignment:
Q  107 cttaaattaattactcttcatttcatcaacttacttacttttaatattctctctcataatca-----gacacaaatgaaatttagcttgaaacatacttg 201  Q
    |||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||| |     | ||||||||||||||||||| | |||||||||    
T  22515817 cttaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataagggcacaaatgaaatttagcttcagacatacttg 22515718  T
Q  202 aaacttgctcaat-cttcttataaaatggaccgaaaa 237  Q
    ||||||| |||||  ||||||||||| ||||| ||||    
T  22515717 aaacttggtcaatatttcttataaaaaggaccaaaaa 22515681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 95 - 225
Target Start/End: Original strand, 9663909 - 9664041
Alignment:
Q  95 ttcatgaatacccttaaattaattactcttcatttcatcaacttacttacttttaatattctctc-tcataatca--gacacaaatgaaatttagcttga 191  Q
    ||||||||||||| |||||||||||||||| ||| || ||||||||||||||||||||||||||| | ||||  |  | ||||||||||||||| ||| |    
T  9663909 ttcatgaatacccctaaattaattactctttattccaccaacttacttacttttaatattctctcataataaataagggcacaaatgaaatttaccttca 9664008  T
Q  192 aacatacttgaaacttgctcaatcttcttataaa 225  Q
    ||||| ||||||||||| ||||||||||||||||    
T  9664009 aacat-cttgaaacttggtcaatcttcttataaa 9664041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 96 - 204
Target Start/End: Original strand, 23026290 - 23026403
Alignment:
Q  96 tcatgaatacccttaaattaattactcttcatttcatcaacttacttacttttaatattctctctcataatca-----gacacaaatgaaatttagcttg 190  Q
    |||||||| ||| |||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||     | ||||||||||||||| |||     
T  23026290 tcatgaatgcccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataatcaataagggcacaaatgaaatttaacttc 23026389  T
Q  191 aaacatacttgaaa 204  Q
    ||||||||||||||    
T  23026390 aaacatacttgaaa 23026403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 104 - 239
Target Start/End: Complemental strand, 46320615 - 46320474
Alignment:
Q  104 acccttaaattaattactcttcatttcatcaacttacttacttttaatattctctctcataatca-----gacacaaatgaaatttagcttgaaacatac 198  Q
    |||| |||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |     |  |||||||||||||| ||| ||||||||    
T  46320615 acccctaaattaattactctttatttcaccaacttacttacttttaatattctctctcataataaataagggtacaaatgaaatttaacttcaaacatac 46320516  T
Q  199 ttgaaacttgctcaat-cttcttataaaatggaccgaaaaaa 239  Q
    || ||||||| |||||  ||||||||||| ||||| ||||||    
T  46320515 ttaaaacttggtcaatatttcttataaaaaggacctaaaaaa 46320474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 58 - 226
Target Start/End: Original strand, 49794923 - 49795096
Alignment:
Q  58 ttatcttcatttaatatacttctatatttnnnnnnnnttcatgaatacccttaaattaattactcttcatttcatcaacttacttacttttaatattctc 157  Q
    |||||||||||||||| || |||| ||||        ||||||||||||| | |||||||||||||| ||| || |||||||||||||||||||||| ||    
T  49794923 ttatcttcatttaatacacctctacatttaattttttttcatgaataccccttaattaattactctttattccaccaacttacttacttttaatattttc 49795022  T
Q  158 tctcat----aatcaga-cacaaatgaaatttagcttgaaacatacttgaaacttgctcaat-cttcttataaaa 226  Q
    ||||||    ||| |||  ||||||||||||||||||  ||||||||||||||||| |||||  |||||||||||    
T  49795023 tctcataataaataagagtacaaatgaaatttagctt-caacatacttgaaacttgatcaatatttcttataaaa 49795096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 98 - 239
Target Start/End: Original strand, 20922780 - 20922927
Alignment:
Q  98 atgaatacccttaaattaattactcttcatttcatcaacttacttacttttaatattctctctcat----aatcaga-cacaaatgaaatttagcttgaa 192  Q
    ||||||| || ||||||||||| | || ||| || |||||||||||||||||||||||||||||||    ||| ||| ||||||||||||||||||| ||    
T  20922780 atgaatatccctaaattaattattttttattccaccaacttacttacttttaatattctctctcataataaataagagcacaaatgaaatttagcttcaa 20922879  T
Q  193 acatacttgaaacttgctcaat-cttcttataaaatggaccgaaaaaa 239  Q
      |||||||||||||| |||||  ||||||||||| | ||| ||||||    
T  20922880 gaatacttgaaacttggtcaatatttcttataaaaagaaccaaaaaaa 20922927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 93; Significance: 2e-45; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 60 - 231
Target Start/End: Complemental strand, 8669958 - 8669782
Alignment:
Q  60 atcttcatttaatatacttctatatttnnnnnnnnttcatgaatacccttaaattaattactcttcatttcatcaacttacttacttttaatattctctc 159  Q
    |||||||||||||| ||||||| ||||        || ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  8669958 atcttcatttaatacacttctacatttaaaaaaaatttatgaatacccttaaattaattactctttattccatcaacttacttacttttaatattctctc 8669859  T
Q  160 tcataatca-----gacacaaatgaaatttagcttgaaacatacttgaaacttgctcaatcttcttataaaatggac 231  Q
    |||||||||     | ||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||| ||||    
T  8669858 tcataatcaataagggcacaaatgaaatttaacttcaaacatacttgaaacttgatcaatcttcttataaaaaggac 8669782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 98 - 239
Target Start/End: Complemental strand, 13882271 - 13882126
Alignment:
Q  98 atgaatacccttaaattaattactcttcatttcatcaacttacttacttttaatattctctctcataatca-----gacacaaatgaaatttagcttgaa 192  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||     | ||||||||||||||||||| ||    
T  13882271 atgaatacccttaaattaattactctttattccatcaacttacttac-tttaatattctctctcataatcaataagggcacaaatgaaatttagcttcaa 13882173  T
Q  193 acatacttgaaacttgctcaatcttcttataaaatggaccgaaaaaa 239  Q
    ||||| |||||||||| ||||||||||||||||| ||||| ||||||    
T  13882172 acatatttgaaacttgatcaatcttcttataaaaaggaccaaaaaaa 13882126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 101 - 239
Target Start/End: Complemental strand, 29226459 - 29226317
Alignment:
Q  101 aatacccttaaattaattactcttcatttcatcaacttacttacttttaatattctctctcataatca----gacacaaatgaaatttagcttgaaacat 196  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||  |||||||||    | ||||||||||||||||||| ||||||    
T  29226459 aatacccttaaattaattactctttattccatcaacttacttacttttaatattttcattcataatcaataaggcacaaatgaaatttagcttcaaacat 29226360  T
Q  197 acttgaaacttgctcaatcttcttataaaatggaccgaaaaaa 239  Q
    |||||||||||| ||||||||||||||||| ||| | ||||||    
T  29226359 acttgaaacttgatcaatcttcttataaaaaggaacaaaaaaa 29226317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 97 - 239
Target Start/End: Complemental strand, 32305896 - 32305748
Alignment:
Q  97 catgaatacccttaaattaattactcttcatttcatcaacttacttacttttaatattctctctcataatca-----gacacaaatgaaatttagcttga 191  Q
    ||||||||||| ||||||||||| |||| ||| || |||||||||||||||||||||||||||||||||| |     | ||||||||||||||||||| |    
T  32305896 catgaatacccctaaattaattattctttattccaccaacttacttacttttaatattctctctcataataaataagggcacaaatgaaatttagcttca 32305797  T
Q  192 aacatacttgaaacttgctcaat-cttcttataaaatggaccgaaaaaa 239  Q
    ||||||||||||||||| |||||  ||||||||||| ||||| ||||||    
T  32305796 aacatacttgaaacttggtcaatatttcttataaaaaggaccaaaaaaa 32305748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 61 - 239
Target Start/End: Complemental strand, 8107117 - 8106934
Alignment:
Q  61 tcttcatttaatatacttctatatttnnnnnnnnttcatgaatacccttaaattaattactcttcatttcatcaacttacttacttttaatattctctct 160  Q
    ||||||||||||| ||||||| ||||        ||||||||||||| |||||||||| ||||| ||| ||  |||||| ||||||||||| |||| |||    
T  8107117 tcttcatttaatacacttctacatttaaaaaaaattcatgaatacccctaaattaattcctctttattccactaacttatttacttttaattttctatct 8107018  T
Q  161 cataatca-----gacacaaatgaaatttagcttgaaacatacttgaaacttgctcaatcttcttataaaatggaccgaaaaaa 239  Q
    |||||| |     |||||||||||||||||| || |||||||||||||||||| ||||||||||||||||| ||| | ||||||    
T  8107017 cataataaataaggacacaaatgaaatttagtttcaaacatacttgaaacttggtcaatcttcttataaaaaggatcaaaaaaa 8106934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 97 - 226
Target Start/End: Original strand, 35634796 - 35634931
Alignment:
Q  97 catgaatacccttaaattaattactcttcatttcatcaacttacttacttttaatattctctctcataatca-----gacacaaatgaaatttagcttga 191  Q
    |||||||| || |||||||||||||||| ||  || |||||||||||||||||||||||||||||||||| |     | ||||||||||||||||||| |    
T  35634796 catgaataaccctaaattaattactctttatcgcaccaacttacttacttttaatattctctctcataataaataagggcacaaatgaaatttagcttca 35634895  T
Q  192 aacatacttgaaacttgctcaat-cttcttataaaa 226  Q
    ||||||||||||||||| |||||  |||||||||||    
T  35634896 aacatacttgaaacttggtcaatatttcttataaaa 35634931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 98 - 239
Target Start/End: Complemental strand, 37533953 - 37533807
Alignment:
Q  98 atgaatacccttaaattaattactcttcatttcatcaacttacttacttttaatattctctctcataatca-----gacacaaatgaaatttagcttgaa 192  Q
    ||||||||  ||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||     | |||||| |||||||| ||| ||    
T  37533953 atgaatacatttaaattaattactctttattccatcaacttacttatttttaatattctctctcataatcaataagggcacaaacgaaatttaacttcaa 37533854  T
Q  193 acatacttgaaacttgctcaatcttcttataaaatggaccgaaaaaa 239  Q
    | ||| |||||||||| |||||||||| |||||| ||| | ||||||    
T  37533853 atatatttgaaacttgatcaatcttctaataaaaaggatcaaaaaaa 37533807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 98 - 166
Target Start/End: Complemental strand, 42570089 - 42570021
Alignment:
Q  98 atgaatacccttaaattaattactcttcatttcatcaacttacttacttttaatattctctctcataat 166  Q
    ||||||| || ||||||||||||| || |||||||||||||||||| ||||||||||||||||||||||    
T  42570089 atgaatatccctaaattaattactatttatttcatcaacttacttatttttaatattctctctcataat 42570021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 112 - 166
Target Start/End: Original strand, 36741715 - 36741769
Alignment:
Q  112 attaattactcttcatttcatcaacttacttacttttaatattctctctcataat 166  Q
    ||||||||||||| ||| ||  ||||||||||||||||||||||||||| |||||    
T  36741715 attaattactcttaattccactaacttacttacttttaatattctctctaataat 36741769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 166
Target Start/End: Complemental strand, 31598722 - 31598690
Alignment:
Q  134 aacttacttacttttaatattctctctcataat 166  Q
    |||||| ||||||||||||||||||||||||||    
T  31598722 aacttaattacttttaatattctctctcataat 31598690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 92; Significance: 8e-45; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 101 - 239
Target Start/End: Original strand, 21262907 - 21263050
Alignment:
Q  101 aatacccttaaattaattactcttcatttcatcaacttacttacttttaatattctctctcataatca-----gacacaaatgaaatttagcttgaaaca 195  Q
    |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||     | | ||||||||||||||||| |||||    
T  21262907 aatacccttaaattaattactctttattccatcaacttacttacttttaatattctctctcataatcaatatgggcgcaaatgaaatttagcttcaaaca 21263006  T
Q  196 tacttgaaacttgctcaatcttcttataaaatggaccgaaaaaa 239  Q
    ||||||||||||| ||||||||||||||||| ||||| ||||||    
T  21263007 tacttgaaacttgatcaatcttcttataaaaaggaccaaaaaaa 21263050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 95 - 237
Target Start/End: Complemental strand, 33314518 - 33314371
Alignment:
Q  95 ttcatgaatacccttaaattaattactcttcatttcatcaacttacttacttttaatattctctctcataatca-----gacacaaatgaaatttagctt 189  Q
    ||||||||||  | |||||||||||||||| ||| || |||||| ||||||||||||||||||||||||||| |     | |||||||||||||||||||    
T  33314518 ttcatgaatattcctaaattaattactctttattccaccaacttgcttacttttaatattctctctcataataaatgagggcacaaatgaaatttagctt 33314419  T
Q  190 gaaacatacttgaaacttgctcaatcttcttataaaatggaccgaaaa 237  Q
     ||||||| |||||||||| ||||||||||||||||| ||||| ||||    
T  33314418 caaacatatttgaaacttgatcaatcttcttataaaaaggaccaaaaa 33314371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 60 - 239
Target Start/End: Original strand, 41174628 - 41174813
Alignment:
Q  60 atcttcatttaatatacttctatatttnnnnnnnn-ttcatgaatacccttaaattaattactcttcatttcatcaacttacttacttttaatattctct 158  Q
    |||||||||||||||||||||||||||         ||||||||||||| | |||||||| ||||| ||||||  |||||| ||||||||||  ||||||    
T  41174628 atcttcatttaatatacttctatattttaaaaaaaattcatgaatacccctcaattaattcctctttatttcactaacttatttacttttaactttctct 41174727  T
Q  159 ctcataatca-----gacacaaatgaaatttagcttgaaacatacttgaaacttgctcaatcttcttataaaatggaccgaaaaaa 239  Q
    |||||||| |     | ||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||| ||||| ||||||    
T  41174728 ctcataataaataagggcacaaatgaaatttagcttaaaatatacttgaaacttggtcaatcttcttataaaaaggaccaaaaaaa 41174813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 97 - 239
Target Start/End: Original strand, 40385240 - 40385390
Alignment:
Q  97 catgaatacccttaaattaattactcttcatttcatcaacttacttacttttaatattctctctcataatca-----gacacaaatgaaatttagcttga 191  Q
    ||||||||||| |||||||||| ||||| ||| ||  |||||| ||||||||||| |||||||||||||| |     | ||||||||||||||||||| |    
T  40385240 catgaatacccctaaattaattcctctttattccactaacttatttacttttaattttctctctcataataaataagggcacaaatgaaatttagcttca 40385339  T
Q  192 aacatacttgaaacttgctcaatctt---cttataaaatggaccgaaaaaa 239  Q
    ||||||||||||||||| ||||||||   ||||||||| ||||| ||||||    
T  40385340 aacatacttgaaacttggtcaatcttcttcttataaaaaggaccaaaaaaa 40385390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 104 - 226
Target Start/End: Complemental strand, 24868648 - 24868520
Alignment:
Q  104 acccttaaattaattactcttcatttcatcaacttacttacttttaatattctctctcataatca-----gacacaaatgaaatttagcttgaaacatac 198  Q
    |||| |||||||||||||||| ||| || |||||||||||||||||||||||||||||||||| |     |  |||||||||||||| ||| ||||||||    
T  24868648 acccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataagggtacaaatgaaatttaacttcaaacatac 24868549  T
Q  199 ttgaaacttgctcaat-cttcttataaaa 226  Q
    |||||||||| |||||  |||||||||||    
T  24868548 ttgaaacttggtcaatatttcttataaaa 24868520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 97 - 231
Target Start/End: Original strand, 3097556 - 3097695
Alignment:
Q  97 catgaatacccttaaattaattactcttcatttcatcaacttacttacttttaatattctctctcataatca-----gacacaaatgaaatttagcttga 191  Q
    |||| |||||| |||||||| | ||||| ||| ||  |||||| ||||||||||| ||| |||||||||| |     | ||||||||||||||||||| |    
T  3097556 catgtatacccctaaattaaatcctctttattccactaacttatttacttttaattttcactctcataataaataagggcacaaatgaaatttagcttca 3097655  T
Q  192 aacatacttgaaacttgctcaatcttcttataaaatggac 231  Q
    ||||||||||||||||| ||||||||||||||||| ||||    
T  3097656 aacatacttgaaacttggtcaatcttcttataaaaaggac 3097695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 166
Target Start/End: Complemental strand, 4238039 - 4237971
Alignment:
Q  98 atgaatacccttaaattaattactcttcatttcatcaacttacttacttttaatattctctctcataat 166  Q
    |||||||||| |||||||||||||||| ||| || ||| ||||||  ||||| |||||| |||||||||    
T  4238039 atgaatacccctaaattaattactcttgattccaccaatttacttcattttattattctatctcataat 4237971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 87; Significance: 8e-42; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 102 - 239
Target Start/End: Original strand, 35050315 - 35050457
Alignment:
Q  102 atacccttaaattaattactcttcatttcatcaacttacttacttttaatattctctctcataatca-----gacacaaatgaaatttagcttgaaacat 196  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||| | ||||    
T  35050315 atacccttaaattaattactctttatttcatcaacttacttacttttaatattctctctcataatcaataaggacacaaatgaaatttagcttcagacat 35050414  T
Q  197 acttgaaacttgctcaatcttcttataaaatggaccgaaaaaa 239  Q
    |||||||||||| || ||||| |||||||| | ||| ||||||    
T  35050415 acttgaaacttgatcgatctttttataaaaagaaccaaaaaaa 35050457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 101 - 232
Target Start/End: Complemental strand, 1553900 - 1553763
Alignment:
Q  101 aatacccttaaattaattactcttcatttcatcaacttacttacttttaatattctctctcataatca-----gacacaaatgaaatttagcttgaaaca 195  Q
    |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||     | ||||||||||||||||||| |||||    
T  1553900 aatacccttaaattaattactctttattccatcaacttacttacttttaatattctctctcataatcaataagggcacaaatgaaatttagcttcaaaca 1553801  T
Q  196 tacttgaaacttgctcaat-cttcttataaaatggacc 232  Q
    ||||||||| ||| ||||| |||||||||||| |||||    
T  1553800 tacttgaaatttgatcaatacttcttataaaaaggacc 1553763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 60 - 239
Target Start/End: Original strand, 27332907 - 27333091
Alignment:
Q  60 atcttcatttaatatacttctatatttnnnnnnnnttcatgaatacccttaaattaattactcttcatttcatcaacttacttacttttaatattctctc 159  Q
    |||||||||||||| ||||||||||||        |  || |||||||||||||||||||||||| ||| ||| ||||||||||||||||||||| ||||    
T  27332907 atcttcatttaatacacttctatatttaaaaaaattctataaatacccttaaattaattactctttattccattaacttacttacttttaatattttctc 27333006  T
Q  160 tcataatca-----gacacaaatgaaatttagcttgaaacatacttgaaacttgctcaatcttcttataaaatggaccgaaaaaa 239  Q
    |||||||||     |  |||||||||||||||||| |||||||||| ||||||| ||||||||||||||||| ||||| ||||||    
T  27333007 tcataatcaataagggtacaaatgaaatttagcttcaaacatacttaaaacttgatcaatcttcttataaaaaggaccaaaaaaa 27333091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 95 - 239
Target Start/End: Original strand, 5800440 - 5800589
Alignment:
Q  95 ttcatgaatacccttaaattaattactcttcatttcatcaacttacttacttttaatattctctctcataatca-----gacacaaatgaaatttagctt 189  Q
    ||||||||||||| |||||||||| ||||| ||| ||  |||||| ||||||||||| |||||||||||||| |     ||||||||||||||||| |||    
T  5800440 ttcatgaatacccctaaattaatttctctttattccactaacttatttacttttaattttctctctcataataaataaggacacaaatgaaatttatctt 5800539  T
Q  190 gaaacatacttgaaacttgctcaatcttcttataaaatggaccgaaaaaa 239  Q
     |||||||||||||||||| ||||||||||||||||| ||||| ||||||    
T  5800540 caaacatacttgaaacttggtcaatcttcttataaaaaggaccaaaaaaa 5800589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 97 - 232
Target Start/End: Original strand, 16130519 - 16130660
Alignment:
Q  97 catgaatacccttaaattaattactcttcatttcatcaacttacttacttttaatattctctctcataatca-----gacacaaatgaaatttagcttga 191  Q
    ||||||||||||||||||||||||| || ||| || |||||||||||||||||||||||||||||||||| |     | ||||||||||||||||||| |    
T  16130519 catgaatacccttaaattaattactttttattccaccaacttacttacttttaatattctctctcataataaataagggcacaaatgaaatttagcttca 16130618  T
Q  192 aacatacttgaaacttgctcaat-cttcttataaaatggacc 232  Q
    ||||||||||||||||| |||||  ||||||||||| |||||    
T  16130619 aacatacttgaaacttggtcaatatttcttataaaaaggacc 16130660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 60 - 226
Target Start/End: Complemental strand, 30222917 - 30222746
Alignment:
Q  60 atcttcatttaatatacttctatatttnnnnnnnnttcatgaatacccttaaattaattactcttcatttcatcaacttacttacttttaatattctctc 159  Q
    |||||||||||||||||||||| ||||        |  ||||||| ||||||||||||||||||| | | |||||||||||||||||||||||||||||     
T  30222917 atcttcatttaatatacttctacatttaaaaaaagtatatgaatatccttaaattaattactctttaatccatcaacttacttacttttaatattctctt 30222818  T
Q  160 tcataatca-----gacacaaatgaaatttagcttgaaacatacttgaaacttgctcaatcttcttataaaa 226  Q
    |||||||||      ||||||||||| |||||| | ||||||| |||||||||| |||||||||||||||||    
T  30222817 tcataatcaataagaacacaaatgaattttagcatcaaacatatttgaaacttgatcaatcttcttataaaa 30222746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 97 - 232
Target Start/End: Original strand, 16129969 - 16130110
Alignment:
Q  97 catgaatacccttaaattaattactcttcatttcatcaacttacttacttttaatattctctctcataatca-----gacacaaatgaaatttagcttga 191  Q
    ||||||||||| ||||||||||||| || ||| || |||||||||||||||||||||||||||||||||| |     | ||||||||||||||||||| |    
T  16129969 catgaatacccctaaattaattactttttattccaccaacttacttacttttaatattctctctcataataaataagggcacaaatgaaatttagcttca 16130068  T
Q  192 aacatacttgaaacttgctcaat-cttcttataaaatggacc 232  Q
    ||||||||||||||||| |||||  ||||||||||| |||||    
T  16130069 aacatacttgaaacttggtcaatatttcttataaaaaggacc 16130110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 60 - 239
Target Start/End: Original strand, 45192541 - 45192725
Alignment:
Q  60 atcttcatttaatatacttctatatttnnnnnnnnttcatgaatacccttaaattaattactcttcatttcatcaacttacttacttttaatattctctc 159  Q
    |||||||||||||||||||||| ||||        | |||||||||||||||||||||||||||| ||| |||||||||||||| |||||||||||| ||    
T  45192541 atcttcatttaatatacttctacatttaaaaaaattccatgaatacccttaaattaattactctttattccatcaacttacttatttttaatattctgtc 45192640  T
Q  160 tcataatca-----gacacaaatgaaatttagcttgaaacatacttgaaacttgctcaatcttcttataaaatggaccgaaaaaa 239  Q
    ||||||| |      ||||||||||| |||||| | ||| ||| | |||||||  ||||||||||||||||| ||| | ||||||    
T  45192641 tcataattaataagaacacaaatgaattttagcataaaaaatattagaaacttaatcaatcttcttataaaaaggatcaaaaaaa 45192725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 104 - 239
Target Start/End: Complemental strand, 9411909 - 9411768
Alignment:
Q  104 acccttaaattaattactcttcatttcatcaacttacttacttttaatattctctctcataatca-----gacacaaatgaaatttagcttgaaacatac 198  Q
    |||| |||||||||||||||| ||| || |||||||||||||||||||||||||||||||||| |     | ||||| ||||||||| ||| ||| ||||    
T  9411909 acccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataagggcacaagtgaaatttaacttcaaatatac 9411810  T
Q  199 ttgaaacttgctcaat-cttcttataaaatggaccgaaaaaa 239  Q
    |||||||||| |||||  ||||||||||| ||||| ||||||    
T  9411809 ttgaaacttggtcaatatttcttataaaaaggaccaaaaaaa 9411768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 98 - 239
Target Start/End: Original strand, 40988075 - 40988220
Alignment:
Q  98 atgaatacccttaaattaattactcttcatttcatcaacttacttacttttaatattctctc-tcataatca--gacacaaatgaaatttagcttgaaac 194  Q
    |||||||||| |||||||||||||||| ||| |  ||||||||||||||||||||||||||| | ||||  |  | |||||||||||||||| || ||||    
T  40988075 atgaatacccctaaattaattactctttattccgccaacttacttacttttaatattctctcataataaataagggcacaaatgaaatttagtttcaaac 40988174  T
Q  195 atacttgaaacttgctcaat-cttcttataaaatggaccgaaaaaa 239  Q
    |||||| ||||||| |||||  ||||||||||| ||||| ||||||    
T  40988175 atacttaaaacttggtcaatatttcttataaaaaggaccaaaaaaa 40988220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 104 - 239
Target Start/End: Complemental strand, 27654785 - 27654646
Alignment:
Q  104 acccttaaattaattactcttcatttcatcaacttacttacttttaatattctctc-tcataatca--gacacaaatgaaatttagcttgaaacatactt 200  Q
    |||| |||||||||||||||| ||| || ||||||||||||||||||||||||||| | ||||  |  | ||||||||||||||| ||| ||| ||||||    
T  27654785 acccctaaattaattactctttattccaccaacttacttacttttaatattctctcataataaataagggcacaaatgaaatttaacttcaaagatactt 27654686  T
Q  201 gaaacttgctcaat-cttcttataaaatggaccgaaaaaa 239  Q
     ||||||| |||||  ||||||||||| ||||| ||||||    
T  27654685 aaaacttgatcaatatttcttataaaaaggaccaaaaaaa 27654646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 171 - 239
Target Start/End: Complemental strand, 35121279 - 35121211
Alignment:
Q  171 cacaaatgaaatttagcttgaaacatacttgaaacttgctcaatcttcttataaaatggaccgaaaaaa 239  Q
    |||||||||||||| |||| |||||||||||||||||| ||||||||||||||||| ||||| ||||||    
T  35121279 cacaaatgaaattttgcttcaaacatacttgaaacttggtcaatcttcttataaaaaggaccaaaaaaa 35121211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 95 - 226
Target Start/End: Complemental strand, 36834421 - 36834289
Alignment:
Q  95 ttcatgaatacccttaaattaattactcttcatttcatcaacttacttacttttaatattctc-tctcataatca--gacacaaatgaaatttagcttga 191  Q
    ||||||||||||  |||||||||||||||| ||| || ||||||||||||||||||||||||| | | ||||  |  |  |||||||||||||||||| |    
T  36834421 ttcatgaatacc--taaattaattactctttattccaccaacttacttacttttaatattctcttataataaataagggtacaaatgaaatttagcttca 36834324  T
Q  192 aacatacttgaaacttgctcaatcttcttataaaa 226  Q
    ||||||||||||| ||  ||||| |||||||||||    
T  36834323 aacatacttgaaatttaatcaattttcttataaaa 36834289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 97 - 166
Target Start/End: Original strand, 4813757 - 4813826
Alignment:
Q  97 catgaatacccttaaattaattactcttcatttcatcaacttacttacttttaatattctctctcataat 166  Q
    |||||||||| |||||||||||||| |||||| || |||||||||||||||||||||||  |||||||||    
T  4813757 catgaatacctttaaattaattacttttcattccaccaacttacttacttttaatattccttctcataat 4813826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 98 - 168
Target Start/End: Complemental strand, 35428491 - 35428417
Alignment:
Q  98 atgaatacccttaaattaattactcttcatttcatcaa----cttacttacttttaatattctctctcataatca 168  Q
    ||||||||||||||||||||||||||| ||| ||||||    |||||||||||||||| ||||||||||||||||    
T  35428491 atgaatacccttaaattaattactctttattccatcaatcaacttacttacttttaattttctctctcataatca 35428417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 95 - 159
Target Start/End: Complemental strand, 34546837 - 34546773
Alignment:
Q  95 ttcatgaatacccttaaattaattactcttcatttcatcaacttacttacttttaatattctctc 159  Q
    ||||||||||||| |||||||||||||||| ||| || |||||||||||||||||||||| ||||    
T  34546837 ttcatgaatacccctaaattaattactctttattccaccaacttacttacttttaatattttctc 34546773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 97 - 166
Target Start/End: Complemental strand, 27846523 - 27846454
Alignment:
Q  97 catgaatacccttaaattaattactcttcatttcatcaacttacttacttttaatattctctctcataat 166  Q
    |||||||| |||||||||||||||| |  ||| || |||||||||||||||||||||| |||||||||||    
T  27846523 catgaatatccttaaattaattactatctattccaccaacttacttacttttaatattatctctcataat 27846454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 95 - 194
Target Start/End: Original strand, 13879058 - 13879161
Alignment:
Q  95 ttcatgaatacccttaaattaattactcttcatttcatcaacttacttacttttaatattctctctcataatca-----gacacaaatgaaatttagctt 189  Q
    |||||||||||| |||||||||||||||||  || || ||||||| ||||| |||||||||| ||||||||| |     | |||||||||||||||||||    
T  13879058 ttcatgaatacc-ttaaattaattactctttcttccaccaacttatttactattaatattctatctcataataaataagggcacaaatgaaatttagctt 13879156  T
Q  190 gaaac 194  Q
     ||||    
T  13879157 taaac 13879161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 230
Target Start/End: Complemental strand, 11908064 - 11907927
Alignment:
Q  97 catgaatacccttaaattaattactcttcatttcatcaacttacttacttttaatattctctctcataat-----cagacacaaatgaaatttagcttga 191  Q
    |||||||||| ||| ||||||||||||| ||| || ||||||| ||| ||||||||  ||||||||||||      ||||||||||||||||||| ||      
T  11908064 catgaatacctttacattaattactcttgattccaccaacttatttatttttaata--ctctctcataataaataaagacacaaatgaaatttagttttc 11907967  T
Q  192 aacatacttgaaacttgctcaat-cttcttataaaatgga 230  Q
    |||| |||| ||| ||  |||||  |||||||||||||||    
T  11907966 aacacacttaaaaattattcaatgtttcttataaaatgga 11907927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 159
Target Start/End: Original strand, 23933321 - 23933386
Alignment:
Q  95 ttcatgaatacccttaaattaattactcttcatttcatcaacttactta-cttttaatattctctc 159  Q
    ||||||||||||| |||||||||||||||| |||  | |||||| ||||  |||||||||||||||    
T  23933321 ttcatgaatacccctaaattaattactcttgattctaccaactttcttattttttaatattctctc 23933386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 97 - 232
Target Start/End: Complemental strand, 1365833 - 1365692
Alignment:
Q  97 catgaatacccttaaattaattactcttcatttcatcaacttacttacttttaatattctctctcataatca-----gacacaaatgaaatttagcttga 191  Q
    |||||||||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||| |     | ||||||||||||||||||| |    
T  1365833 catgaatacccttaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataagggcacaaatgaaatttagcttca 1365734  T
Q  192 aacatacttgaaacttgctcaat-cttcttataaaatggacc 232  Q
    ||||||||||||||||| |||||  ||||||||||| |||||    
T  1365733 aacatacttgaaacttggtcaatatttcttataaaaaggacc 1365692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 97 - 239
Target Start/End: Original strand, 24338017 - 24338165
Alignment:
Q  97 catgaatacccttaaattaattactcttcatttcatcaacttacttacttttaatattctctctcataatca-----gacacaaatgaaatttagcttga 191  Q
    |||||||| || |||||||||||||||| ||| || |||||||||||||||||||||||||||||||||| |     | ||||||||||||||||||| |    
T  24338017 catgaataaccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataagggcacaaatgaaatttagcttca 24338116  T
Q  192 aacatacttgaaacttgctcaat-cttcttataaaatggaccgaaaaaa 239  Q
    ||||||||||||||||| |||||  |||||||||||  |||| ||||||    
T  24338117 aacatacttgaaacttggtcaatatttcttataaaaaagaccaaaaaaa 24338165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 97 - 226
Target Start/End: Original strand, 7243421 - 7243556
Alignment:
Q  97 catgaatacccttaaattaattactcttcatttcatcaacttacttacttttaatattctctctcataatca-----gacacaaatgaaatttagcttga 191  Q
    ||||||||||| ||||||||||| |||| ||| || |||||||||||||||||||||||||||||||||| |     | ||||||||||||||| ||| |    
T  7243421 catgaatacccctaaattaattattctttattccaccaacttacttacttttaatattctctctcataataaataagggcacaaatgaaatttaacttca 7243520  T
Q  192 aacatacttgaaacttgctcaat-cttcttataaaa 226  Q
    ||||||||||||||||| |||||  |||||||||||    
T  7243521 aacatacttgaaacttggtcaatatttcttataaaa 7243556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 98 - 226
Target Start/End: Complemental strand, 6890 - 6756
Alignment:
Q  98 atgaatacccttaaattaattactcttcatttcatcaacttacttacttttaatattctctctcataatca-----gacacaaatgaaatttagcttgaa 192  Q
    ||||||| ||||||||||||||||||| |||  | |||||||||||||||||||||||| ||||||||| |       ||||||||||||||||||| ||    
T  6890 atgaatatccttaaattaattactctttattctaccaacttacttacttttaatattctttctcataataaataagcgcacaaatgaaatttagcttcaa 6791  T
Q  193 acatacttgaaacttgctcaat-cttcttataaaa 226  Q
    |||||||||||||||| |||||  |||||||||||    
T  6790 acatacttgaaacttggtcaatatttcttataaaa 6756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 134 - 239
Target Start/End: Original strand, 258358 - 258469
Alignment:
Q  134 aacttacttacttttaatattctctctcataatca-----gacacaaatgaaatttagcttgaaacatacttgaaacttgctcaat-cttcttataaaat 227  Q
    |||||||||| |||||||||||||||||||||| |     | ||||||||||||||| ||| |||||||||| ||||||| |||||  |||||||||||     
T  258358 aacttacttaattttaatattctctctcataataaataaaggcacaaatgaaatttaacttcaaacatacttaaaacttggtcaatatttcttataaaaa 258457  T
Q  228 ggaccgaaaaaa 239  Q
    ||||| ||||||    
T  258458 ggacctaaaaaa 258469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 101 - 166
Target Start/End: Complemental strand, 30594 - 30529
Alignment:
Q  101 aatacccttaaattaattactcttcatttcatcaacttacttacttttaatattctctctcataat 166  Q
    ||||||| |||||||||||||||| ||| |  |||||||||||||||||||||| |||||||||||    
T  30594 aatacccctaaattaattactcttgattccgccaacttacttacttttaatattgtctctcataat 30529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 166
Target Start/End: Original strand, 30839 - 30900
Alignment:
Q  101 aatacccttaaattaattactcttcatttcatcaacttacttacttttaatattctctctcataat 166  Q
    ||||||| |||||||||||||||| ||| || ||    || |||||||||||||||||||||||||    
T  30839 aatacccctaaattaattactcttgattccacca----acatacttttaatattctctctcataat 30900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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