View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4110_low_1 (Length: 376)
Name: NF4110_low_1
Description: NF4110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4110_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 2 - 360
Target Start/End: Original strand, 33198172 - 33198543
Alignment:
| Q |
2 |
atgaactagaaactttcaataattaagaaagtgctataaaaccagaagtcatgacaaaaggctttaac-------------aagtttcgttctacgtctg |
88 |
Q |
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||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
33198172 |
atgaactagaaactttcaataataaagaacttgctataaaaccagaagtcatgacaaaaggctttaacaagttattataacaagtttcgttctacgtctg |
33198271 |
T |
|
| Q |
89 |
taccctccatgtttcaaaaccacagccaacattaatcttaacttgtgcttagctaaataaattgcgcaggaagacacacaagtacaaaattctgcctttt |
188 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33198272 |
taccctccatgtttcaaaaccacagccaacattaatcttaacttgtgcttagctaaataaattgcgcaggaagacacacaagtacaaaattctgcctttt |
33198371 |
T |
|
| Q |
189 |
aataacaggcttcgcaacttgtgcaacaaagtgttgtatgcaacatgactaatgattaatatatactttcttaagtttgtaaacttgtgaaccagcgaaa |
288 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
33198372 |
aataacaggcttcgcaacttgtgcaacaaagtgctgtatgcaacatgactaatgattaatatatacattcttaagtttgtaaacttgtgaaccagcgaaa |
33198471 |
T |
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| Q |
289 |
cagaaacacaacaaaagaaccatgacacatgtgccattgctatgaggggttaaactctatttgtgactatag |
360 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
33198472 |
cagaaacacaacaaaagaaccatgacacatgtgccattgctatgaggggttaaactatatttgtgactatag |
33198543 |
T |
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