View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4110_low_2 (Length: 208)
Name: NF4110_low_2
Description: NF4110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4110_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 39 - 193
Target Start/End: Complemental strand, 3617656 - 3617503
Alignment:
| Q |
39 |
cagaaacagtgttgtaagtaaaactagaacaaaccagctttagggaaatcagggacgacacgaatcttagttttgatgccatgaagacgaggatcctggt |
138 |
Q |
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| T |
3617656 |
cagaaacagtgttgtaagtaaaac-agaacaaaccagctttagggaaatcagggacgacacgaatcttagttttgatgccatgaagacgaggatcctggt |
3617558 |
T |
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| Q |
139 |
tatggttagtgtaagccgacattgtgtgtgtagaagtgagttgagtccagagaag |
193 |
Q |
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| T |
3617557 |
tatggttagtgtaagccgacattgtgtgtgtagaaatgagttgagtccagagaag |
3617503 |
T |
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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 136
Target Start/End: Original strand, 41966228 - 41966299
Alignment:
| Q |
65 |
gaacaaaccagctttagggaaatcagggacgacacgaatcttagttttgatgccatgaagacgaggatcctg |
136 |
Q |
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| T |
41966228 |
gaacaaaccaggttttgggaaattgggaactacacgaatcttatttttgatgccatgaagacgggaatcctg |
41966299 |
T |
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