View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4111_high_11 (Length: 451)
Name: NF4111_high_11
Description: NF4111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4111_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 165; Significance: 4e-88; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 194 - 369
Target Start/End: Complemental strand, 8176983 - 8176807
Alignment:
| Q |
194 |
ggacagatgaaattccctctgttgtttagttagtattt-agttgtatttggtgttataggaatatcagttttaagttttaaaataaattgcacctcttta |
292 |
Q |
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| T |
8176983 |
ggacagatgaaattccctctgttgtttagttagtattttagttgtatttggtgttataggaatatcagttttaagttttaaaataaattgcacctcttta |
8176884 |
T |
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| Q |
293 |
taaatgagagagatcatttgattttcttttcaattctagcgagtttgtcttcacacttatgagttgttgagtaatct |
369 |
Q |
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| T |
8176883 |
taaatgagagagatcattcgattttcttttcaattctagcgagtttgtcttcacacttatgagttgttgagtaatct |
8176807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 8 - 142
Target Start/End: Complemental strand, 8177169 - 8177035
Alignment:
| Q |
8 |
agattattctgtcaaaagtgttccatgagttcccagatttgagaaggttgcaagcttatactgttctacagaacatagcttctcaaagggtgttggaaaa |
107 |
Q |
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| T |
8177169 |
agattcttctgtcaaaagtgttccatgagttcccagatttgagaaggttgcaagcttatactgttctacagaacatagcttctcagagggtgttggaaaa |
8177070 |
T |
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| Q |
108 |
ggtagggttccataaagagggtatgctcagaaagg |
142 |
Q |
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| T |
8177069 |
ggtagggttccataaagagggtatgctcagaaagg |
8177035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 370 - 437
Target Start/End: Complemental strand, 8176701 - 8176634
Alignment:
| Q |
370 |
tagagttagcactaagacgctcaagttaataaaatgaggaaggaaagtgtgcgaaaagtggtgaaaat |
437 |
Q |
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| T |
8176701 |
tagagttagcattaagatgctcaagttaatgaaatgaggaaggaaagtgtgcgaaaagtggtgaaaat |
8176634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 401 - 437
Target Start/End: Original strand, 45046467 - 45046503
Alignment:
| Q |
401 |
aaatgaggaaggaaagtgtgcgaaaagtggtgaaaat |
437 |
Q |
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| T |
45046467 |
aaatgaggaaggaaaatgtgcgaaaagtgatgaaaat |
45046503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 84 - 141
Target Start/End: Complemental strand, 25503336 - 25503279
Alignment:
| Q |
84 |
agcttctcaaagggtgttggaaaaggtagggttccataaagagggtatgctcagaaag |
141 |
Q |
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| T |
25503336 |
agcttctcagagggtcttggaaaaggttgggttccttagggagggtatactcagaaag |
25503279 |
T |
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