View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4111_high_12 (Length: 445)
Name: NF4111_high_12
Description: NF4111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4111_high_12 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 392; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 18 - 445
Target Start/End: Complemental strand, 43851136 - 43850709
Alignment:
| Q |
18 |
tgtctgtagttgatttctctaaagaaaagggaagagtaaccatttactacccttgctaatgagtaggttaacctttatgatttacggatctcctgcagtt |
117 |
Q |
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| T |
43851136 |
tgtctgtagttgatttctctgaagaaaagggaagagtaaccatttactacccttgctaatgagtaggttaacctttatgatttatgaatctcctggagtt |
43851037 |
T |
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| Q |
118 |
tgtacggtgatctatgtcttaaagttcttcgattgaacttgaatgtaaataatagcttgttatgtggtttgtgaattgaaattaaagagtgatgggcatg |
217 |
Q |
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| T |
43851036 |
tgtacggtgatctatgtcttagcgttcttcgattgaacttgaatgtaaataatagcttgttatgtggtttgtgatttgaaattaaagagtgatgggcatg |
43850937 |
T |
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| Q |
218 |
cgcgcgcatgcacacagggtctagattttattattctaacgtttatggattggctttggagcaaaaccattttctgatatatttgttaccttgcagcagg |
317 |
Q |
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| T |
43850936 |
cgcgcgcatgcacacagggtctagattttattattctaacgtttatggattggctttggagcaaaaccattttctgatatatttgttaccttgcagcagg |
43850837 |
T |
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| Q |
318 |
acactataaaaggagccaagtggagctgtgcaactgagatgacagaagaacaagcattatcggagcagcaaagaatgtttgtagagtcacgtgctggaat |
417 |
Q |
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| T |
43850836 |
acactataaaaggagccaagtggagctgtgcaactgagatgacagaagaacaagcattatcggagcagcaaagaatgtttgtagagtcacctgctggaat |
43850737 |
T |
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| Q |
418 |
taaccgatgtttccaatcaacctgatga |
445 |
Q |
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| T |
43850736 |
taaccgatgtttccaatcaacctaatga |
43850709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 286 - 417
Target Start/End: Complemental strand, 24012500 - 24012369
Alignment:
| Q |
286 |
attttctgatatatttgttaccttgcagcaggacactataaaaggagccaagtggagctgtgcaactgagatgacagaagaacaagcattatcggagcag |
385 |
Q |
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| T |
24012500 |
attttctgatgtatttgttgccttgcagcaagactctataaaaggtgccaagtggagtggcgcagctgagatgaccgaggaacaagcattagcagagcag |
24012401 |
T |
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| Q |
386 |
caaagaatgtttgtagagtcacgtgctggaat |
417 |
Q |
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| T |
24012400 |
caaaggatgtttgcagaggcacgtgctagaat |
24012369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 90 - 253
Target Start/End: Complemental strand, 24012783 - 24012625
Alignment:
| Q |
90 |
ctttatgatttacggatctcctgcagtttgtacggtgatctatgtcttaaagttcttcgattgaacttgaatgtaa-ataatagcttgttatgtggtttg |
188 |
Q |
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| T |
24012783 |
ctttatgatttatcgatctcttggagtttgtatggtcatctatgttttagagttcatagattgaacttgaatgtaattttacagcttgttctgtggtttg |
24012684 |
T |
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| Q |
189 |
tgaattgaaattaaagagtgatgggcatgcgcgcgcatgcacacagggtctagattttattattc |
253 |
Q |
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| T |
24012683 |
cgttttgagattgaagagtgatgagtat------gaatgtacacagggtctagattttattattc |
24012625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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