View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4111_high_15 (Length: 420)

Name: NF4111_high_15
Description: NF4111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4111_high_15
NF4111_high_15
[»] chr4 (10 HSPs)
chr4 (19-420)||(27570936-27571336)
chr4 (34-122)||(27422360-27422448)
chr4 (297-393)||(27414960-27415055)
chr4 (34-127)||(27414715-27414809)
chr4 (310-420)||(27425216-27425326)
chr4 (160-269)||(27419645-27419754)
chr4 (60-122)||(27424962-27425026)
chr4 (363-420)||(27566577-27566634)
chr4 (47-122)||(27566870-27566945)
chr4 (167-229)||(27425068-27425130)


Alignment Details
Target: chr4 (Bit Score: 386; Significance: 0; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 19 - 420
Target Start/End: Complemental strand, 27571336 - 27570936
Alignment:
Q  19 ggattgtaatagagtctagttaggtacaagggttcacatggtattgtcttatagaggtcattttcaaggattagatgaagctaaatataagaacatgcaa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27571336 ggattgtaatagagtctagttaggtacaagggttcacatggtattgtcttatagaggtcattttcaaggattagatgaagctaaatataagaacatgcaa 27571237  T
Q  119 atactctaccttctgagataatggccaacagacatggtaaaacaatgcattggtgaaaaagacctgatgtttgttaatgcattttggtatagttgatcca 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  27571236 atactctaccttctgagataatggccaacagacatggtaaaacaatgcattggtgaaaaagacctgatgtttgttaatgcattttgg-atagttgatcca 27571138  T
Q  219 ctggtagacatactacagacatatctcatgtttcttcagattgacaatgcacaatatacatcagccaactattatctgatatatctgcaatttgtaaatc 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  27571137 ctggtagacatactacagacatatctcatgtttcttcagattgacaatgcacaatatacatcagccaactattatctgatatatcttcaatttgtaaatc 27571038  T
Q  319 atgagtaggacctgaattatagatcagaaacagtgttaggaggcaagaagagaaccaatattaaacgcaagatcacaaacgactatgaaccacgttttat 418  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27571037 atgagtaggacctgaattatagatcagaagcagtgttaggaggcaagaagagaaccaatattaaacgcaagatcacaaacgactatgaaccacgttttat 27570938  T
Q  419 at 420  Q
    ||    
T  27570937 at 27570936  T

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Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 34 - 122
Target Start/End: Original strand, 27422360 - 27422448
Alignment:
Q  34 ctagttaggtacaagggttcacatggtattgtcttatagaggtcattttcaaggattagatgaagctaaatataagaacatgcaaatac 122  Q
    ||||| ||| ||||| | |||||||||||||||||||||| |||||||||||||||||||||||| |||||  ||||||||||||||||    
T  27422360 ctagtgagggacaagagatcacatggtattgtcttatagaagtcattttcaaggattagatgaagttaaatggaagaacatgcaaatac 27422448  T

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Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 297 - 393
Target Start/End: Original strand, 27414960 - 27415055
Alignment:
Q  297 atatatctgcaatttgtaaatcatgagtaggacctgaattatagatcagaaacagtgttaggaggcaagaagagaaccaatattaaacgcaagatca 393  Q
    |||||| ||||| ||||||| | |||||||||||||| |||||| ||||||||||||| |||||| || |||||||||||| || ||| ||||||||    
T  27414960 atatatgtgcaacttgtaaagcttgagtaggacctgatttatagctcagaaacagtgtgaggagg-aaaaagagaaccaattttgaacacaagatca 27415055  T

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Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 34 - 127
Target Start/End: Original strand, 27414715 - 27414809
Alignment:
Q  34 ctagttaggtacaagggttcacatggtattgtcttatagaggtcattttc-aaggattagatgaagctaaatataagaacatgcaaatactctac 127  Q
    ||||| ||| ||||||| ||||||||||||||| |||||| ||||||||| ||  |||||||||||||||||  ||||||||||| |||| ||||    
T  27414715 ctagtgagggacaagggatcacatggtattgtcctatagaagtcattttcaaactattagatgaagctaaatggaagaacatgcacataccctac 27414809  T

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Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 310 - 420
Target Start/End: Original strand, 27425216 - 27425326
Alignment:
Q  310 ttgtaaatcatgagtaggacctgaattatagatcagaaacagtgttaggaggcaagaagagaaccaatattaaacgcaagatcacaaacgactatgaacc 409  Q
    ||||||| | || ||||||||||| |||||| |||||| ||||||||||||| || | |||||| |||||| ||| ||||||||||||| || | |||||    
T  27425216 ttgtaaagcttgcgtaggacctgatttatagttcagaagcagtgttaggaggaaaaacgagaacaaatattgaacacaagatcacaaaccaccaggaacc 27425315  T
Q  410 acgttttatat 420  Q
    ||  |||||||    
T  27425316 acaatttatat 27425326  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 160 - 269
Target Start/End: Original strand, 27419645 - 27419754
Alignment:
Q  160 acaatgcattggtgaaaaagacctgatgtttgttaatgcattttggtatagttgatccactggtagacatactacagacatatctcatgtttcttcagat 259  Q
    |||||||| |||||||| | ||||||||||| ||  ||||||| ||||||| | ||||| | |||||||| ||  |||||| || |||||||||||  ||    
T  27419645 acaatgcaatggtgaaagaaacctgatgttttttcttgcatttgggtatagataatccaattgtagacatgctttagacatctcacatgtttcttctaat 27419744  T
Q  260 tgacaatgca 269  Q
    ||||| ||||    
T  27419745 tgacattgca 27419754  T

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Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 60 - 122
Target Start/End: Original strand, 27424962 - 27425026
Alignment:
Q  60 tattgtcttatagaggtcattttcaaggat--tagatgaagctaaatataagaacatgcaaatac 122  Q
    |||||||||||||| |||||||||||||||  ||||||||| |||||  |||||||| |||||||    
T  27424962 tattgtcttatagaagtcattttcaaggattatagatgaagttaaatggaagaacattcaaatac 27425026  T

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Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 363 - 420
Target Start/End: Complemental strand, 27566634 - 27566577
Alignment:
Q  363 aagaagagaaccaatattaaacgcaagatcacaaacgactatgaaccacgttttatat 420  Q
    |||||||||||||||||  ||| ||||||||||||| ||||| |||||| ||||||||    
T  27566634 aagaagagaaccaatatagaacacaagatcacaaaccactataaaccacattttatat 27566577  T

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Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 47 - 122
Target Start/End: Complemental strand, 27566945 - 27566870
Alignment:
Q  47 agggttcacatggtattgtcttatagaggtcattttcaaggattagatgaagctaaatataagaacatgcaaatac 122  Q
    |||| |||||||| ||||| | || || |||||||||||| ||||||||||| |||||  ||||||||||| ||||    
T  27566945 agggatcacatggcattgtatcatggaagtcattttcaagcattagatgaagataaatggaagaacatgcacatac 27566870  T

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Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 167 - 229
Target Start/End: Original strand, 27425068 - 27425130
Alignment:
Q  167 attggtgaaaaagacctgatgtttgttaatgcattttggtatagttgatccactggtagacat 229  Q
    |||||||||| | ||||||||||||||| || |||||||||||| | || || ||||||||||    
T  27425068 attggtgaaagaaacctgatgtttgttattgaattttggtatagctaatgcaatggtagacat 27425130  T

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