View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4111_high_17 (Length: 397)
Name: NF4111_high_17
Description: NF4111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4111_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 1 - 389
Target Start/End: Complemental strand, 23930365 - 23929977
Alignment:
| Q |
1 |
aatagttctgttggccaagaaattcgacatcctttgaaatggagaagctgtgatataaactttatgagctctcaacatttctgcagcagacgacgactga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |
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| T |
23930365 |
aatagttctgttggccaagaaattcgacatcctttgaaatggagaagctgtgatataaactttatgagctctcaacatatctgcagcagacgatgactga |
23930266 |
T |
|
| Q |
101 |
aggagtttatacatcggtgtaccagcagataatcgcgcctcaagtccatcagcaaagtaatgagctaaacgctgaagtccatcgccacttggcgaagaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23930265 |
aggagtttatacatcggtgtaccagcagataatcgcgcctcaagtccatcagcaaagtaatgagctaaacgctgaagtccatcgccacttggcgaagaat |
23930166 |
T |
|
| Q |
201 |
gctgcctaatctgctttagtatatcatttgcattcctttgatcatagctaccaacagcttgtgcacattgagttaacaaagtccataaatctaccgtagt |
300 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23930165 |
gctgcctaatctgcttcagtatatcatttgcattcctttgatcatagctaccaacagcttgtgcacattgagttaacaaagtccataaatctaccgtagt |
23930066 |
T |
|
| Q |
301 |
acttagttttttccccttaccggaacctttcttggatcgcgatgtctttccattagaggttccattagatcttcctgaaccagaaatct |
389 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23930065 |
acttagttttttccccttaccggaacctttcttggatcgcgatgtctttccattagaggttccattagatcttcctgaaccagaaatct |
23929977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 139 - 291
Target Start/End: Complemental strand, 41621052 - 41620900
Alignment:
| Q |
139 |
ctcaagtccatcagcaaagtaatgagctaaacgctgaagtccatcgccacttggcgaagaatgctgcctaatctgctttagtatatcatttgcattcctt |
238 |
Q |
| |
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|||||| |||| |||||||||||||||||| |||||||||||||| ||| |||||||| || | |||||||||||| |||| ||||||| ||||||| |
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| T |
41621052 |
ctcaagaccattagcaaagtaatgagctaaccgctgaagtccatccccaaaaggcgaagagtgtttcctaatctgcttgagtagctcatttgtattcctt |
41620953 |
T |
|
| Q |
239 |
tgatcatagctaccaacagcttgtgcacattgagttaacaaagtccataaatc |
291 |
Q |
| |
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||||||||||| | || || |||||||||||||||| || |||||| ||||| |
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| T |
41620952 |
tgatcatagcttgccacggcctgtgcacattgagttagcatagtccacaaatc |
41620900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 139 - 271
Target Start/End: Complemental strand, 41624398 - 41624266
Alignment:
| Q |
139 |
ctcaagtccatcagcaaagtaatgagctaaacgctgaagtccatcgccacttggcgaagaatgctgcctaatctgctttagtatatcatttgcattcctt |
238 |
Q |
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|||||| |||| ||||||||||||||||||||| || ||||||||||| |||||||| || ||||||||||| || |||| |||| || ||||||| |
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| T |
41624398 |
ctcaagaccattagcaaagtaatgagctaaacgttggagtccatcgccgaaaggcgaagagtgttgcctaatctgtttgagtagctcatctgtattcctt |
41624299 |
T |
|
| Q |
239 |
tgatcatagctaccaacagcttgtgcacattga |
271 |
Q |
| |
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||||| ||||| | |||||||||||||||||| |
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|
| T |
41624298 |
tgatcgtagctcgccacagcttgtgcacattga |
41624266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 139 - 271
Target Start/End: Complemental strand, 41627359 - 41627227
Alignment:
| Q |
139 |
ctcaagtccatcagcaaagtaatgagctaaacgctgaagtccatcgccacttggcgaagaatgctgcctaatctgctttagtatatcatttgcattcctt |
238 |
Q |
| |
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|||||| |||| ||||||||||||||||||||| || ||||||||||| |||||||| || ||||||||||| || |||| |||| || ||||||| |
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| T |
41627359 |
ctcaagaccattagcaaagtaatgagctaaacgttggagtccatcgccgaaaggcgaagagtgatgcctaatctgtttgagtagctcatctgtattcctt |
41627260 |
T |
|
| Q |
239 |
tgatcatagctaccaacagcttgtgcacattga |
271 |
Q |
| |
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||||| ||||| | |||||||||||||||||| |
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|
| T |
41627259 |
tgatcgtagctcgccacagcttgtgcacattga |
41627227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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