View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4111_high_2 (Length: 795)
Name: NF4111_high_2
Description: NF4111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4111_high_2 |
 | |
|
| [»] scaffold0419 (1 HSPs) |
| | |
|
| [»] scaffold0277 (2 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 695; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 695; E-Value: 0
Query Start/End: Original strand, 15 - 785
Target Start/End: Original strand, 27599992 - 27600765
Alignment:
| Q |
15 |
aacaactccttcctttcataaaaaataaatacatatttgtccccccatatagcttagaaaccatggagagaaaagatcgacattgattacctgacaaatt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27599992 |
aacaactccttcctttcataaaaaataaatacatatttgtccccccatatagcttagaaaccatggagagaaaagatcgacattgattacctgacaaatt |
27600091 |
T |
|
| Q |
115 |
ttttgtatatgaccttccaaatccaatccatttagctcactgtaaacctcttgcatgcttataagatagtnnnnnnnn-ttcagtaatgtttcaattgca |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
27600092 |
ttttgtatatgaccttccaaatccaatccatttagctcactgtaaacctcttgcatgcttataagatagtaaaaaaaaattcagtaatgtttcaattgca |
27600191 |
T |
|
| Q |
214 |
atcatgctatacttcacatcaaaggttaaaaacatgtgtgctaataattttccatgtgtgaaatcatatgacattgggagagatttatgaaaccaggata |
313 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27600192 |
atcatgctataattcacatcaaaggttaaaaacatgtgtgctaataattttccatgtgtgaaatcatatgacattgggagagatttatgaaaccaggata |
27600291 |
T |
|
| Q |
314 |
cgtaatatgggtgtaatacggatacgatcgaggatgcgttaaatttttaaaatttagtatgcgatatggctaaaatatgttaacatgatttaattcataa |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27600292 |
cgtaatatgggtgtaatacggatacgatcgaggatgcgttaaatttttaaaatttagtatgcgatatggctaaaatatgttaacatgatttaattcataa |
27600391 |
T |
|
| Q |
414 |
agatacaatagacttcacatccaagcagaaacccttgtaaaaagtgacttaataaaaacgtgtatagttactaatagtaaggacacttaaattcatcaac |
513 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27600392 |
agatacaatagacttcacatccaagcagaaacccttgtaaaaagtgacttaataaaaacgtgtatagttactaatagtaaggacacttaaattcatcaac |
27600491 |
T |
|
| Q |
514 |
caaatgtagacccatattcaaaacatctacacaaacatggacatcgtattcaacaatgacaacaccaatagtaatttgcaaaaataacctatccgaatgc |
613 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||| |
|
|
| T |
27600492 |
caaatgtagacccatattcaaaacatctacataaacatggacatcgtattcaacaatgacaacaccaatagtaatttgcagaaataagctatctgaatgc |
27600591 |
T |
|
| Q |
614 |
aatatgatatattggtcatttgaacatatttgagaaacaataattggtttataataatgataatgatgtacctagtcatgttg--ttccttttcttattt |
711 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |
|
|
| T |
27600592 |
aatatgatatattggccatttgaacatatttgagaaacaataattggtttataataatgataatgatgtacctagtcatgttgttttccttttctttttt |
27600691 |
T |
|
| Q |
712 |
gtcagtaagcatcatgttctgcatgcctgatgacaataaagctagatcttgctgctgcaaactttctgtctctg |
785 |
Q |
| |
|
||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27600692 |
gtctgtaagcaccatgttctgcatgcctgatgacaataaagctagatcttgctgctgcaaactttctgtctctg |
27600765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 646 - 741
Target Start/End: Complemental strand, 26659734 - 26659638
Alignment:
| Q |
646 |
agaaacaat-aattggtttataataatgataatgatgtacctagtcatgttgttccttttcttatttgtcagtaagcatcatgttctgcatgcctga |
741 |
Q |
| |
|
||||||||| |||| ||||||||||| |||| ||||||||||||||| ||||||||||||| | | ||| |||||| || ||| ||||||||||| |
|
|
| T |
26659734 |
agaaacaattaatttgtttataataacgatattgatgtacctagtcacagtgttccttttcttttgtttcaataagcaccaagttgtgcatgcctga |
26659638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 646 - 741
Target Start/End: Complemental strand, 26765705 - 26765609
Alignment:
| Q |
646 |
agaaacaat-aattggtttataataatgataatgatgtacctagtcatgttgttccttttcttatttgtcagtaagcatcatgttctgcatgcctga |
741 |
Q |
| |
|
||||||||| |||| ||||||||||| |||| ||||||||||||||| ||||||||||||| | | ||| |||||| || ||| ||||||||||| |
|
|
| T |
26765705 |
agaaacaattaatttgtttataataacgatattgatgtacctagtcacagtgttccttttcttttgtttcaataagcaccaagttgtgcatgcctga |
26765609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 695 - 785
Target Start/End: Complemental strand, 26659621 - 26659534
Alignment:
| Q |
695 |
tgttccttttcttatttgtcagtaagcatcatgttctgcatgcctgatgacaataaagctagatcttgctgctgcaaactttctgtctctg |
785 |
Q |
| |
|
||||||||||||| | | |||||||||| || |||||||||| |||| || ||||||||||| || ||||||||| |||||||||||| |
|
|
| T |
26659621 |
tgttccttttcttttgtttcagtaagcaccaagttctgcatgtctga---cactaaagctagatactgttgctgcaaaatttctgtctctg |
26659534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 695 - 785
Target Start/End: Complemental strand, 26765592 - 26765505
Alignment:
| Q |
695 |
tgttccttttcttatttgtcagtaagcatcatgttctgcatgcctgatgacaataaagctagatcttgctgctgcaaactttctgtctctg |
785 |
Q |
| |
|
||||||||||||| | | |||||||||| || |||||||||| |||| || ||||||||||| || ||||||||| |||||||||||| |
|
|
| T |
26765592 |
tgttccttttcttttgtttcagtaagcaccaagttctgcatgtctga---cactaaagctagatactgttgctgcaaaatttctgtctctg |
26765505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 237
Target Start/End: Original strand, 27589333 - 27589374
Alignment:
| Q |
196 |
agtaatgtttcaattgcaatcatgctatacttcacatcaaag |
237 |
Q |
| |
|
|||||||||||||||| ||||| | ||||||||||||||||| |
|
|
| T |
27589333 |
agtaatgtttcaattgtaatcacgttatacttcacatcaaag |
27589374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 646 - 686
Target Start/End: Complemental strand, 28790075 - 28790034
Alignment:
| Q |
646 |
agaaacaat-aattggtttataataatgataatgatgtacct |
686 |
Q |
| |
|
||||||||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
28790075 |
agaaacaattaattagtttataataatgataatgatgtacct |
28790034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 690 - 785
Target Start/End: Original strand, 18728067 - 18728159
Alignment:
| Q |
690 |
catgttgttccttttcttatttgtcagtaagcatcatgttctgcatgcctgatgacaataaagctagatcttgctgctgcaaactttctgtctctg |
785 |
Q |
| |
|
|||| ||||||||||||| | | |||||||||| || |||| |||||||||| || ||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
18728067 |
catggtgttccttttcttttgtttcagtaagcaccaagttccgcatgcctga---cactaaagctagatgttgctgctgcaaaatttctgtctctg |
18728159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 685 - 785
Target Start/End: Original strand, 18652038 - 18652135
Alignment:
| Q |
685 |
ctagtcatgttgttccttttcttatttgtcagtaagcatcatgttctgcatgcctgatgacaataaagctagatcttgctgctgcaaactttctgtctct |
784 |
Q |
| |
|
|||| |||| |||||||||||| | | |||||||||| || |||| |||||||||| || ||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
18652038 |
ctagccatggtgttccttttctattgtttcagtaagcaccaagttccgcatgcctga---cactaaagctagatgttgctgctgcaaaatttctgtctct |
18652134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 685 - 785
Target Start/End: Original strand, 18676096 - 18676193
Alignment:
| Q |
685 |
ctagtcatgttgttccttttcttatttgtcagtaagcatcatgttctgcatgcctgatgacaataaagctagatcttgctgctgcaaactttctgtctct |
784 |
Q |
| |
|
|||| |||| |||||||||||| | | |||||||||| || |||| |||||||||| ||||||| |||||| ||||||||||||| ||||||||||| |
|
|
| T |
18676096 |
ctagccatggtgttccttttctattgtttcagtaagcaccaagttccgcatgcctga---caataaaactagatgttgctgctgcaaaatttctgtctct |
18676192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 685 - 785
Target Start/End: Original strand, 18720626 - 18720723
Alignment:
| Q |
685 |
ctagtcatgttgttccttttcttatttgtcagtaagcatcatgttctgcatgcctgatgacaataaagctagatcttgctgctgcaaactttctgtctct |
784 |
Q |
| |
|
|||| |||| |||||||||||| | | |||||||||| || |||| ||||||||| ||||||| |||||| ||||||||||||| ||||||||||| |
|
|
| T |
18720626 |
ctagccatggtgttccttttctattgtttcagtaagcaccaagttccgcatgcctgg---caataaaactagatgttgctgctgcaaaatttctgtctct |
18720722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 690 - 785
Target Start/End: Original strand, 18686141 - 18686233
Alignment:
| Q |
690 |
catgttgttccttttcttatttgtcagtaagcatcatgttctgcatgcctgatgacaataaagctagatcttgctgctgcaaactttctgtctctg |
785 |
Q |
| |
|
|||| |||||||||||| | | ||| |||||| || |||| |||||||||| || ||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
18686141 |
catggtgttccttttctattgtttcattaagcaccaagttccgcatgcctga---cactaaagctagatgttgctgctgcaaaatttctgtctctg |
18686233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0419 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0419
Description:
Target: scaffold0419; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 713 - 785
Target Start/End: Complemental strand, 11138 - 11069
Alignment:
| Q |
713 |
tcagtaagcatcatgttctgcatgcctgatgacaataaagctagatcttgctgctgcaaactttctgtctctg |
785 |
Q |
| |
|
|||||||||| || ||| ||||||||||| || ||||||||||| |||||||||| || |||||||||||| |
|
|
| T |
11138 |
tcagtaagcaccaagttttgcatgcctga---cactaaagctagatattgctgctgccaaatttctgtctctg |
11069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0277 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: scaffold0277
Description:
Target: scaffold0277; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 646 - 686
Target Start/End: Original strand, 991 - 1032
Alignment:
| Q |
646 |
agaaacaat-aattggtttataataatgataatgatgtacct |
686 |
Q |
| |
|
||||||||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
991 |
agaaacaattaattagtttataataatgataatgatgtacct |
1032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0277; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 646 - 686
Target Start/End: Original strand, 10124 - 10165
Alignment:
| Q |
646 |
agaaacaat-aattggtttataataatgataatgatgtacct |
686 |
Q |
| |
|
||||||||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
10124 |
agaaacaattaattagtttataataatgataatgatgtacct |
10165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 357 - 398
Target Start/End: Complemental strand, 45472895 - 45472854
Alignment:
| Q |
357 |
tttttaaaatttagtatgcgatatggctaaaatatgttaaca |
398 |
Q |
| |
|
|||||||||||||| || |||||||||||| ||||||||||| |
|
|
| T |
45472895 |
tttttaaaatttaggatacgatatggctaagatatgttaaca |
45472854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University