View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4111_high_25 (Length: 291)
Name: NF4111_high_25
Description: NF4111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4111_high_25 |
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Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 24 - 274
Target Start/End: Complemental strand, 42392838 - 42392588
Alignment:
| Q |
24 |
acagacagaaccattaacggtaaccttgcctttaaaaataaggtcttcacagcttctcctagatgcaactgaaaacagaagagcacgattacaaatttag |
123 |
Q |
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| T |
42392838 |
acagacagaaccattaacggtaaccttgcctttaaaaataaggtcttcacagcttctcctagatgcaactgaaaacagaagagcacgattacaaatttag |
42392739 |
T |
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| Q |
124 |
ctacgcacatttagtccaatattttggctcattagatgcattttttaattcaaataactaagcctccctacttttcaagctaaacaagttcgattatgtt |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42392738 |
ctacgcacatttagtccaatattttggctcattagatgcattttttaattcaaataactaagcctccctacttttcaagctaaacaagttcgattatgtt |
42392639 |
T |
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| Q |
224 |
gttatttctgtttcatataaaaacattaagttctgatacaatccgaatatt |
274 |
Q |
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| T |
42392638 |
gttatttctgtttcatataaaaacattaagttctgatacaatccgaatatt |
42392588 |
T |
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