View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4111_high_26 (Length: 289)
Name: NF4111_high_26
Description: NF4111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4111_high_26 |
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Alignment Details
Target: chr5 (Bit Score: 164; Significance: 1e-87; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 7 - 266
Target Start/End: Complemental strand, 41452362 - 41452103
Alignment:
| Q |
7 |
tggttgaaaaagtatctttatacttccgctgtgactacgtttgtcctttggggtacaccaattcttgtatctgtggttacttttggtacttgtacgctca |
106 |
Q |
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||||||||||| | |||||||||| ||| |||||||| |||||| |||||||| |||| | |||||||||||||||||||||||||||||| ||||| |
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| T |
41452362 |
tggttgaaaaaatttctttatactaacgccgtgactacatttgtcttttggggtgcacctacatttgtatctgtggttacttttggtacttgtatgctca |
41452263 |
T |
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| Q |
107 |
tagggatcccacttgagtcaggaaaggttctgtcggcacttgcaacattcaggatgcttcaaaggcctatttatagtcttccagatgtaatttcaatgat |
206 |
Q |
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|||||||||||||||| ||||| ||| ||||||| |||||||| ||||||||||| |||||| ||||||||||| |||||||||||||||||||||||| |
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| T |
41452262 |
tagggatcccacttgaatcagggaagattctgtcagcacttgcgacattcaggattcttcaagagcctatttataatcttccagatgtaatttcaatgat |
41452163 |
T |
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| Q |
207 |
agcacaaactaaagtttctcttgataggatcgggtcgttccttcgtcttgatgacttgca |
266 |
Q |
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|||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
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| T |
41452162 |
agcacaaactaaagtttctcttgataggatagcgtcgttccttcgtcttgatgacttgca |
41452103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 7 - 266
Target Start/End: Complemental strand, 41439193 - 41438934
Alignment:
| Q |
7 |
tggttgaaaaagtatctttatacttccgctgtgactacgtttgtcctttggggtacaccaattcttgtatctgtggttacttttggtacttgtacgctca |
106 |
Q |
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| T |
41439193 |
tggttgaaaaaatttctttatactaacgccgttactacatttgtcttttggggtgcacctacatttgtatctgtggttacttttggtacttgtatgctcg |
41439094 |
T |
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| Q |
107 |
tagggatcccacttgagtcaggaaaggttctgtcggcacttgcaacattcaggatgcttcaaaggcctatttatagtcttccagatgtaatttcaatgat |
206 |
Q |
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| T |
41439093 |
tagggatcccacttgaatcaggaaagattctgtcagcacttgcaacattcaggattcttcaagagcctatttataatcttccagatgtaatttcaatgat |
41438994 |
T |
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| Q |
207 |
agcacaaactaaagtttctcttgataggatcgggtcgttccttcgtcttgatgacttgca |
266 |
Q |
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|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |
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| T |
41438993 |
agcacaaactaaagtttctcttgataggattgcatcgttccttcgtcttgatgacttgca |
41438934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 117 - 271
Target Start/End: Original strand, 14372115 - 14372269
Alignment:
| Q |
117 |
acttgagtcaggaaaggttctgtcggcacttgcaacattcaggatgcttcaaaggcctatttatagtcttccagatgtaatttcaatgatagcacaaact |
216 |
Q |
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| T |
14372115 |
acttgagtcaggaaaggttctgtcggcacttgcaacattcaggatgcttcaaaggcctatttatagtcttccagatgtaatttcaatgatagcacaaact |
14372214 |
T |
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| Q |
217 |
aaagtttctcttgataggatcgggtcgttccttcgtcttgatgacttgcagtctg |
271 |
Q |
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| T |
14372215 |
aaagtttctcttgataggatcgggtcgttccttcgtcttgatgacttgcagtctg |
14372269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 14371968 - 14372098
Alignment:
| Q |
1 |
caggggtggttgaaaaagtatctttatacttccgctgtgactacgtttgtcctttggggtacaccaattcttgtatctgtggttacttttggtacttgta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14371968 |
caggggtggttgaaaaagtatctttatacttccgctgtgactacgtttgtcctttggggtacaccaattcttgtatctgtggttacttttggtacttgta |
14372067 |
T |
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| Q |
101 |
cgctcatagggatcccacttgagtcaggaaa |
131 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
14372068 |
cgctcatagggatcccacttgagtcaggaaa |
14372098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 73 - 269
Target Start/End: Complemental strand, 14241287 - 14241091
Alignment:
| Q |
73 |
gtatctgtggttacttttggtacttgtacgctcatagggatcccacttgagtcaggaaaggttctgtcggcacttgcaacattcaggatgcttcaaaggc |
172 |
Q |
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|||||||||||||||||||||||||||| |||||||||| |||||||||| ||||| ||| || |||| | |||||||||||||| ||| |||||| || |
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| T |
14241287 |
gtatctgtggttacttttggtacttgtatgctcataggggtcccacttgaatcagggaagattttgtcagtacttgcaacattcaagattcttcaagagc |
14241188 |
T |
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| Q |
173 |
ctatttatagtcttccagatgtaatttcaatgatagcacaaactaaagtttctcttgataggatcgggtcgttccttcgtcttgatgacttgcagtc |
269 |
Q |
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| T |
14241187 |
ctatttataatcttccagatgtaatttcaatgatagcacaaactaaagtttctcttgataggattgcatcgttccttcgccttgatgacttgcagtc |
14241091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 7e-21; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 77 - 236
Target Start/End: Complemental strand, 22727681 - 22727522
Alignment:
| Q |
77 |
ctgtggttacttttggtacttgtacgctcatagggatcccacttgagtcaggaaaggttctgtcggcacttgcaacattcaggatgcttcaaaggcctat |
176 |
Q |
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||||||||||||||||| ||||| || ||||| || || ||||| ||||||||| || | || || |||||||||||||| || ||||||| ||||| |
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| T |
22727681 |
ctgtggttacttttggtgcttgtgttcttataggcattccgcttgaatcaggaaagattttatctgctcttgcaacattcagaattcttcaaactcctat |
22727582 |
T |
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| Q |
177 |
ttatagtcttccagatgtaatttcaatgatagcacaaactaaagtttctcttgataggat |
236 |
Q |
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|||||||||| ||| |||||||||||| |||||||| || |||||||| |||||||| |
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| T |
22727581 |
ccatagtcttcctgatacaatttcaatgattgcacaaaccaaggtttctctagataggat |
22727522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 71 - 236
Target Start/End: Complemental strand, 22751006 - 22750841
Alignment:
| Q |
71 |
ttgtatctgtggttacttttggtacttgtacgctcatagggatcccacttgagtcaggaaaggttctgtcggcacttgcaacattcaggatgcttcaaag |
170 |
Q |
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|||| |||||||||||||||||| |||||| | |||||| |||||||||| ||||| ||| | | || ||||||||||||| ||| || ||| |
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| T |
22751006 |
ttgtgtctgtggttacttttggttcttgtattgttataggggtcccacttgaatcagggaagatcttatcttcacttgcaacatttcagattctgcaaga |
22750907 |
T |
|
| Q |
171 |
gcctatttatagtcttccagatgtaatttcaatgatagcacaaactaaagtttctcttgataggat |
236 |
Q |
| |
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|||||||||| ||||||||| |||||||||||| ||||| ||| ||||||||||||||||| |
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| T |
22750906 |
acctatttataatcttccagacacaatttcaatgatgtcacaatgtaaggtttctcttgataggat |
22750841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 145 - 236
Target Start/End: Original strand, 22739370 - 22739461
Alignment:
| Q |
145 |
cttgcaacattcaggatgcttcaaaggcctatttatagtcttccagatgtaatttcaatgatagcacaaactaaagtttctcttgataggat |
236 |
Q |
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|||||||| |||| || ||||||| ||||| ||||||||||| || |||||||||||| |||||||| || |||||||| |||||||| |
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| T |
22739370 |
cttgcaacgttcaaaattcttcaaactcctatctatagtcttcctgacacaatttcaatgattgcacaaaccaaggtttctctagataggat |
22739461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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