View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4111_high_28 (Length: 274)
Name: NF4111_high_28
Description: NF4111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4111_high_28 |
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Alignment Details
Target: chr7 (Bit Score: 175; Significance: 3e-94; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 39 - 213
Target Start/End: Original strand, 33119721 - 33119895
Alignment:
| Q |
39 |
cttctccaatttgatgtgcatgcatgtgatggtaatgttgcatttgcatcaataatttcatactaattttatcaccaatgtcatattttagaaatttgaa |
138 |
Q |
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| T |
33119721 |
cttctccaatttgatgtgcatgcatgtgatggtaatgttgcatttgcatcaataatttcatactaattttatcaccaatgtcatattttagaaatttgaa |
33119820 |
T |
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| Q |
139 |
aatagagtgcttgagttatccttgattttgcatagttgaagacggtgaaggtaatttattcaccattaatcaaaa |
213 |
Q |
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| T |
33119821 |
aatagagtgcttgagttatccttgattttgcatagttgaagacggtgaaggtaatttattcaccattaatcaaaa |
33119895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 274
Target Start/End: Original strand, 33119925 - 33119957
Alignment:
| Q |
242 |
ctaatcgatccattattacttacttaaaactat |
274 |
Q |
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| T |
33119925 |
ctaatcgatccattattatttacttaaaactat |
33119957 |
T |
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