View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4111_high_40 (Length: 226)
Name: NF4111_high_40
Description: NF4111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4111_high_40 |
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| [»] chr4 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 6 - 226
Target Start/End: Complemental strand, 23930726 - 23930506
Alignment:
| Q |
6 |
aattttccgtcaccgtttcatcagaaacattcttcaatctgtgtaagcagttaaccactgttacttcttctctatcaatcttgagatcctcaagtcttaa |
105 |
Q |
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| T |
23930726 |
aattttccgtcaccgtttcatcagaaacattcttcaatctgtgtaagcagttaaccactgttacttcttctctatcaatcttgagatcctcaagtcttaa |
23930627 |
T |
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| Q |
106 |
agtgtcccatttctgagcaaggcaattgtactcaaatggaactccaaacctcttgcagtacttcacaagtcgccgacctgtctcttcaaccctttctgca |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23930626 |
agtgtcccatttctgagcaaggcaattgtactcaaatggaactccaaacctcttgcagtacttcacaagtcgccgacctgtctcttcaaccctttctgca |
23930527 |
T |
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| Q |
206 |
ggcctaaatcctggctgagga |
226 |
Q |
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||||||||||||||||||||| |
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| T |
23930526 |
ggcctaaatcctggctgagga |
23930506 |
T |
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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 226
Target Start/End: Complemental strand, 41621447 - 41621331
Alignment:
| Q |
110 |
tcccatttctgagcaaggcaattgtactcaaatggaactccaaacctcttgcagtacttcacaagtcgccgacctgtctcttcaaccctttctgcaggcc |
209 |
Q |
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||||||||||| |||| ||| ||||| |||||||| || ||| |||||||||| ||| | | |||| ||||| || || ||||||||||||||| |
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| T |
41621447 |
tcccatttctgtgcaatgcagttgtattcaaatggtacattgaacttcttgcagtagttctctaaacgccttcctgtttcctctgccctttctgcaggcc |
41621348 |
T |
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| Q |
210 |
taaatcctggctgagga |
226 |
Q |
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| T |
41621347 |
taaatcctggctgagga |
41621331 |
T |
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