View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4111_high_9 (Length: 514)
Name: NF4111_high_9
Description: NF4111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4111_high_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 11 - 416
Target Start/End: Complemental strand, 2607738 - 2607335
Alignment:
| Q |
11 |
cacagaaaagcgtacctgacaatggtctgggttgagaggttgattagaacgaataatctgatgaagatcagtgtccatcaattcataaacaatgtaaaca |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2607738 |
cacagaaaagcgtacctgacaatggtctgggttgagaggttgattagaacgaataatctgatgaagatcagtgtccatcaattcataaacaatgtaaaca |
2607639 |
T |
|
| Q |
111 |
tcattaaaattatccttttgtggaggtcgtataatatccttaatagcaataatctgtgaataattttcatcatcaggaccttattatagcataataataa |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2607638 |
tcattaaaattatccttttgtggaggtcgtataatatccttaatagcaataatctgtgaataattttcatcatcaggaccttattatagcataataataa |
2607539 |
T |
|
| Q |
211 |
caaaacnnnnnnnnncctt-gaagttagaatagtacattttcatggtccatgtgacgaagaagcttaatttccctcaaagtccttttagcatcaataatg |
309 |
Q |
| |
|
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2607538 |
aaaa---taaaaaaaccttggaagttagaatagtacattttcatggtccatgtgacgaagaagcttaatttccctcaaagtccttttagcatcaataatg |
2607442 |
T |
|
| Q |
310 |
ttgtcaaatgtattggcaatcttcttgatggcaacttcctcgtgtgtatcagaattaacagcagcactgaaaatattgtaaaaaagtgtgtgatattgat |
409 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2607441 |
ttgtcaaatgtattggcaatcttcttgatggcaacttcctcatgtgtatcagaattaacagcagcactgaaaatattgtaaaaaagtgtgtgatattgat |
2607342 |
T |
|
| Q |
410 |
atttatg |
416 |
Q |
| |
|
||||||| |
|
|
| T |
2607341 |
atttatg |
2607335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 79; Significance: 1e-36; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 256 - 382
Target Start/End: Original strand, 41337854 - 41337980
Alignment:
| Q |
256 |
tccatgtgacgaagaagcttaatttccctcaaagtccttttagcatcaataatgttgtcaaatgtattggcaatcttcttgatggcaacttcctcgtgtg |
355 |
Q |
| |
|
|||||||||||||| ||||| ||||| ||||||||||||||||||||||| || |||||||||| ||| ||||||||||||||||||||| || |||| |
|
|
| T |
41337854 |
tccatgtgacgaaggagcttgatttctctcaaagtccttttagcatcaattatattgtcaaatgcattaccaatcttcttgatggcaacttgttcatgtg |
41337953 |
T |
|
| Q |
356 |
tatcagaattaacagcagcactgaaaa |
382 |
Q |
| |
|
|||||||||||||||||||||| |||| |
|
|
| T |
41337954 |
tatcagaattaacagcagcactaaaaa |
41337980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 243 - 380
Target Start/End: Complemental strand, 11057714 - 11057577
Alignment:
| Q |
243 |
tacattttcatggtccatgtgacgaagaagcttaatttccctcaaagtccttttagcatcaataatgttgtcaaatgtattggcaatcttcttgatggca |
342 |
Q |
| |
|
|||||||||||| ||||| || |||||||| || ||||||| || |||||||||||||| || |||||||||||| |||| |||||||||| ||||| |
|
|
| T |
11057714 |
tacattttcatgatccatatggcgaagaagttttatttcccgtaaggtccttttagcatctattctgttgtcaaatgcattgccaatcttcttaatggcg |
11057615 |
T |
|
| Q |
343 |
acttcctcgtgtgtatcagaattaacagcagcactgaa |
380 |
Q |
| |
|
||||||||| |||| |||| ||| |||||||||||||| |
|
|
| T |
11057614 |
acttcctcgcgtgtctcagcatttacagcagcactgaa |
11057577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 56 - 166
Target Start/End: Original strand, 41336942 - 41337052
Alignment:
| Q |
56 |
agaacgaataatctgatgaagatcagtgtccatcaattcataaacaatgtaaacatcattaaaattatccttttgtggaggtcgtataatatccttaata |
155 |
Q |
| |
|
|||| |||| || ||||| ||||||||||||||||||||||| |||||||| |||||||| || ||||||| || |||||||| |||||||| || |
|
|
| T |
41336942 |
agaatgaattatatgatggagatcagtgtccatcaattcatagacaatgtatacatcattgaatgcctcctttttcgggggtcgtatgatatccttgatg |
41337041 |
T |
|
| Q |
156 |
gcaataatctg |
166 |
Q |
| |
|
||||| ||||| |
|
|
| T |
41337042 |
gcaatgatctg |
41337052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 243 - 380
Target Start/End: Original strand, 29767788 - 29767925
Alignment:
| Q |
243 |
tacattttcatggtccatgtgacgaagaagcttaatttccctcaaagtccttttagcatcaataatgttgtcaaatgtattggcaatcttcttgatggca |
342 |
Q |
| |
|
|||||||||||| |||||||| || |||| |||||||| | || ||||||||||||||||| |||||||||||| |||| ||| |||||| |||||| |
|
|
| T |
29767788 |
tacattttcatgatccatgtgccgctgaagtttaatttctcgtaaggtccttttagcatcaattctgttgtcaaatgcattgccaaccttcttaatggca |
29767887 |
T |
|
| Q |
343 |
acttcctcgtgtgtatcagaattaacagcagcactgaa |
380 |
Q |
| |
|
||||| || |||| || | ||| |||||||||||||| |
|
|
| T |
29767888 |
acttcttcccgtgtctccgcatttacagcagcactgaa |
29767925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 50 - 151
Target Start/End: Original strand, 29767492 - 29767593
Alignment:
| Q |
50 |
ttgattagaacgaataatctgatgaagatcagtgtccatcaattcataaacaatgtaaacatcattaaaattatccttttgtggaggtcgtataatatcc |
149 |
Q |
| |
|
|||||| |||||||| || ||||| |||||||| ||||| || |||||||||||||| || ||||| ||||| ||||| ||||| ||||||||||| ||| |
|
|
| T |
29767492 |
ttgattggaacgaattatttgatgcagatcagtatccattaactcataaacaatgtacacgtcattgaaattctccttctgtggtggtcgtataatgtcc |
29767591 |
T |
|
| Q |
150 |
tt |
151 |
Q |
| |
|
|| |
|
|
| T |
29767592 |
tt |
29767593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 61 - 127
Target Start/End: Complemental strand, 22661789 - 22661723
Alignment:
| Q |
61 |
gaataatctgatgaagatcagtgtccatcaattcataaacaatgtaaacatcattaaaattatcctt |
127 |
Q |
| |
|
||||||||||||| |||||||| |||||||| ||||| ||||| || ||||||||||| || ||||| |
|
|
| T |
22661789 |
gaataatctgatgcagatcagtatccatcaactcatacacaatatacacatcattaaacttttcctt |
22661723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 247 - 335
Target Start/End: Complemental strand, 34415999 - 34415911
Alignment:
| Q |
247 |
ttttcatggtccatgtgacgaagaagcttaatttccctcaaagtccttttagcatcaataatgttgtcaaatgtattggcaatcttctt |
335 |
Q |
| |
|
|||||||| ||||| || ||||| ||||| ||||| | | |||||| ||||||||||| |||||||||||| ||| ||||||||||| |
|
|
| T |
34415999 |
ttttcatgatccatatggcgaagcagcttgatttcacggagagtcctcttagcatcaatcttgttgtcaaatgcatttgcaatcttctt |
34415911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 123
Target Start/End: Complemental strand, 52548684 - 52548623
Alignment:
| Q |
62 |
aataatctgatgaagatcagtgtccatcaattcataaacaatgtaaacatcattaaaattat |
123 |
Q |
| |
|
|||||||||||| | ||| |||||||| | ||||||||||| |||||||| |||||||||| |
|
|
| T |
52548684 |
aataatctgatgcaaatcggtgtccatgagttcataaacaagataaacatccttaaaattat |
52548623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University