View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4111_low_10 (Length: 522)
Name: NF4111_low_10
Description: NF4111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4111_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 205 - 512
Target Start/End: Complemental strand, 45509338 - 45509028
Alignment:
| Q |
205 |
gaggtgaaagaacttctctttccatttatttggttnnnnnnnngtgggaagagaaatttaattattttgaaaatgatatatagaattttactccgatgag |
304 |
Q |
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|||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
45509338 |
gaggcgaaagaacttctctttccatttatttggttaaaaaaaagtgggaagagaaatttaattattttgaaaatgatatatagaattttactccaatgag |
45509239 |
T |
|
| Q |
305 |
aagtttcatccctaagctgcttaactcacaaatataatttatctctcttct---atatttcttgtggactctcccatttttacaattttaaatgcataaa |
401 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45509238 |
aagtttcatccctaagctgcttaactcacaaatataatttatctctcttcttctatatttcttgtggactctcccatttttacaattttaaatgcataaa |
45509139 |
T |
|
| Q |
402 |
attaatattataatcctattgaactgaagtttcttaaattagcaactttgactaaatctataaaaactcaaaattttgtggtacaccaaaacaatatttt |
501 |
Q |
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||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
45509138 |
attaatattataatcctgttgaactgaagtttcttaaatcagcaactttgactaaatctataaaaactcaaaattttgtggtacaccaaagcaatatttt |
45509039 |
T |
|
| Q |
502 |
attaccctatg |
512 |
Q |
| |
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||||||||||| |
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| T |
45509038 |
attaccctatg |
45509028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 243; Significance: 1e-134; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 205 - 511
Target Start/End: Original strand, 19845078 - 19845383
Alignment:
| Q |
205 |
gaggtgaaagaacttctctttccatttatttggttnnnnnnnn-gtgggaagagaaatttaattattttgaaaatgatatatagaattttactccgatga |
303 |
Q |
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|||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
19845078 |
gaggcgaaggaacttctctttccatttatttggttaaaaaaaaagtgggaagagaaatttaattattttgaaaatgatatatagaattttactccaatga |
19845177 |
T |
|
| Q |
304 |
gaagtttcatccctaagctgcttaactcacaaatataatttatctctcttctatatttcttgtgg-actctcccatttttacaattttaaatgcataaaa |
402 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
19845178 |
gaagtttcatccctaagctgcttaactcacaaatataatttatct---ttctatatttcttgtgggactctcccatttttacaattttaaatgcataaaa |
19845274 |
T |
|
| Q |
403 |
ttaatattataatcctattgaactgaagtttcttaaattagcaactttgactaaatctataaaaactcaaaattttgtggtacaccaaaacaatatttta |
502 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19845275 |
ttaatattataatcctattgaactgaagtttcttaaattagcaactttgactaaatctataaaaactcaaaattttgtggtacaccaaaacaatatttta |
19845374 |
T |
|
| Q |
503 |
ttaccctat |
511 |
Q |
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||||||||| |
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|
| T |
19845375 |
ttaccctat |
19845383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 408
Target Start/End: Original strand, 40946560 - 40946645
Alignment:
| Q |
324 |
cttaactcacaaatataatttatctctcttctatatttcttgtggactctcccatttttacaatttt-aaatgcataaaattaata |
408 |
Q |
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|||||| |||| |||| |||| ||||||||| ||||||| ||| || |||||||||| ||| |||| ||||||||||||| |||| |
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| T |
40946560 |
cttaacccacatatatcatttttctctcttccatatttcatgttcacactcccattttaacactttttaaatgcataaaatcaata |
40946645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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