View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4111_low_11 (Length: 522)
Name: NF4111_low_11
Description: NF4111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4111_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 12 - 504
Target Start/End: Original strand, 43851130 - 43851625
Alignment:
| Q |
12 |
acagacacagaaccagattacaagcatcaatagtataactaacactaccaaagactaaactttagcaagcatacatttataaacagaaatgcataa---t |
108 |
Q |
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| T |
43851130 |
acagacacagaaccagattacaagcatcaatagtataactaacactaccaaagactaaactttagcaagcatacatttataaacagaaatgcataataat |
43851229 |
T |
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| Q |
109 |
gcttcataattaataatttcaacggcaaaacagaaatacttcaactaaagacaaatgccacatggcagctttttattggattgttttatagtgaatgaat |
208 |
Q |
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| T |
43851230 |
gcttcataattaataatttcaacggcaaaacagaaatacttcaactaaagacaaatgccacatggcagctttttattggattgttttatagtgaatgaat |
43851329 |
T |
|
| Q |
209 |
ttccctttctactaagtttgaattcatagtatatagtatatataatatgtgacacaaattgccggcttgaatacgttgtttgtgtcaacactaggacgga |
308 |
Q |
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| T |
43851330 |
ttccctttctactaagtttgaattcatagtatatagtatatataatatgtgacacaaattgccggcttgaatacgttgtttgtgtcaacactaggacgga |
43851429 |
T |
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| Q |
309 |
cttttcttgggagtcactgtccatctcccatatcaaatcatttattaacatttcattatatatttctcctctttgttccnnnnnnnttaaactacacaca |
408 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
43851430 |
cttttcttgggagtcactgtccatctcccatatcaaatcatttatcaacatttcattatatatttctcctctttgttccaaaaaaattaaactacacaca |
43851529 |
T |
|
| Q |
409 |
tacttgtcttaataaccaccatgggaactgagtctccnnnnnnnnnnnnnccaattgcttcttcagaggctgaaaaggtctctttctcagcacaag |
504 |
Q |
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| T |
43851530 |
tacttgtcttaataaccaccatgggaactgagtctccaaaaaatgaaaaaccaattgcttcttcagaggctgaaaaggtctctttctcagcacaag |
43851625 |
T |
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