View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4111_low_13 (Length: 496)

Name: NF4111_low_13
Description: NF4111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4111_low_13
NF4111_low_13
[»] chr7 (7 HSPs)
chr7 (9-485)||(33120009-33120490)
chr7 (23-365)||(33032574-33032916)
chr7 (135-265)||(34906304-34906434)
chr7 (135-265)||(34913891-34914021)
chr7 (143-265)||(1470597-1470719)
chr7 (138-191)||(35702424-35702477)
chr7 (418-485)||(33032442-33032509)
[»] chr6 (3 HSPs)
chr6 (23-194)||(22366572-22366743)
chr6 (146-216)||(26384421-26384491)
chr6 (418-485)||(22366823-22366890)
[»] chr5 (6 HSPs)
chr5 (142-265)||(10214390-10214513)
chr5 (142-265)||(10101033-10101156)
chr5 (142-265)||(9678699-9678822)
chr5 (142-265)||(10104836-10104959)
chr5 (143-216)||(21036232-21036305)
chr5 (143-216)||(20982827-20982899)
[»] chr4 (2 HSPs)
chr4 (132-262)||(41108114-41108244)
chr4 (149-265)||(7600923-7601038)
[»] chr8 (2 HSPs)
chr8 (145-271)||(7224365-7224491)
chr8 (143-203)||(1086910-1086970)
[»] chr3 (1 HSPs)
chr3 (143-203)||(5130615-5130675)


Alignment Details
Target: chr7 (Bit Score: 402; Significance: 0; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 9 - 485
Target Start/End: Complemental strand, 33120490 - 33120009
Alignment:
Q  9 gagcagagatagtaacaacaaaagacagaaacctcatttttgaaactaatactacaaacatgaagtaaagtcccacatcgtttggtttaggcttatacta 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  33120490 gagcagagatagtaacaacaaaagacagaaacctcatttttgaaactaatactacaaacatgaaataaagtcccacatcgtttggtttaggcttatacta 33120391  T
Q  109 aatgtttatatactctacgcggtgagcaatggtcacgaccttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttctaaggaga 208  Q
    |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33120390 aatgtttatatactctacgcggagagcaacggtcacgaccttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttctaaggaga 33120291  T
Q  209 caggaacataaatctggatgaggatttgtgaccgtgtgatcagagcgtgattaacggttctatggtgatacctacgggaatcatcataagttgactgtag 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  33120290 caggaacataaatctggatgaggatttgtgaccgtgtgatcagagcgtgattaacggttctatggtgagacctacgggaatcatcataagttgactgtag 33120191  T
Q  309 atgatcgttctcag-----ccagtctggttggggtggtcacacggtaatcttgacagatttccaatcttttcttaattttgctaagataaaatgaattaa 403  Q
    ||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  33120190 atgatcgttctcagccagcccagtctggttggggtggtcacacggtaatcttgacagatttccaatctttttttaattttgctaagatagaatgaattaa 33120091  T
Q  404 caagnnnnnnnntgatttcataaggattttaattacggttgaagagaacttaagtacctgaacttgactgatccatatgaga 485  Q
    ||||        | ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  33120090 caagaaaaaaaataatttcataaggattttaattatggttgaagagaacgtaagtacctgaacttgactgatccatatgaga 33120009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 23 - 365
Target Start/End: Complemental strand, 33032916 - 33032574
Alignment:
Q  23 acaacaaaagacagaaacctcatttttgaaactaatactacaaacatgaagtaaagtcccacatcgtttggtttaggcttatactaaatgtttatatact 122  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||| ||||||| ||| |||| ||||||||||||||||     
T  33032916 acaacaaaagacagaaacctcattttttaaactaatactacaaacatgaaatatagtcccacatcttttggttcaggattatgctaaatgtttatataca 33032817  T
Q  123 ctacgcggtgagcaatggtcacgaccttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttctaaggagacaggaacataaatc 222  Q
      |||||| ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33032816 gcacgcggagagctttggtcacgaccttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttctaaggagacaggaacataaatc 33032717  T
Q  223 tggatgaggatttgtgaccgtgtgatcagagcgtgattaacggttctatggtgatacctacgggaatcatcataagttgactgtagatgatcgttctcag 322  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||| ||||||||||||||||||||||||||    
T  33032716 tggatgaggatttgtgaccgtgtgatcagagcgtgattaacggttctgtggtgagacccacgggaatcatcatgagttgactgtagatgatcgttctcag 33032617  T
Q  323 ccagtctggttggggtggtcacacggtaatcttgacagatttc 365  Q
    ||||||||||||||||||||||||||   ||||||||||||||    
T  33032616 ccagtctggttggggtggtcacacggctgtcttgacagatttc 33032574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 135 - 265
Target Start/End: Original strand, 34906304 - 34906434
Alignment:
Q  135 caatggtcacgaccttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttctaaggagacaggaacataaatctggatgaggatt 234  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| || |    
T  34906304 caattgtcacgaccttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttctaaggagacaggaacatacgtctggatgatgaat 34906403  T
Q  235 tgtgaccgtgtgatcagagcgtgattaacgg 265  Q
       ||||||| ||||||||||||||||||||    
T  34906404 gaagaccgtgcgatcagagcgtgattaacgg 34906434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 135 - 265
Target Start/End: Complemental strand, 34914021 - 34913891
Alignment:
Q  135 caatggtcacgaccttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttctaaggagacaggaacataaatctggatgaggatt 234  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| || |    
T  34914021 caattgtcacgaccttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttctaaggagacaggaacatacgtctggatgatgaat 34913922  T
Q  235 tgtgaccgtgtgatcagagcgtgattaacgg 265  Q
       ||||||| ||||||||||||||||||||    
T  34913921 gaagaccgtgcgatcagagcgtgattaacgg 34913891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 143 - 265
Target Start/End: Complemental strand, 1470719 - 1470597
Alignment:
Q  143 acgaccttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttctaaggagacaggaacataaatctggatgaggatttgtgaccg 242  Q
    ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||  || ||    ||||||    
T  1470719 acgaccttacttgaacatgatctattctataggatcgtactactgtgtccttgatttctaaggagacaggaacatacgtctggtggatgaaccatgaccg 1470620  T
Q  243 tgtgatcagagcgtgattaacgg 265  Q
    |||||||||||| ||||||||||    
T  1470619 tgtgatcagagcatgattaacgg 1470597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 138 - 191
Target Start/End: Original strand, 35702424 - 35702477
Alignment:
Q  138 tggtcacgaccttacttgaacaggatctgttctataggatcgtactactgtgtc 191  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  35702424 tggtcacgaccttacttgaacaggatctgttctataggatggtactactgtgtc 35702477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 418 - 485
Target Start/End: Complemental strand, 33032509 - 33032442
Alignment:
Q  418 atttcataaggattttaattacggttgaagagaacttaagtacctgaacttgactgatccatatgaga 485  Q
    |||||||| |||||||| ||| ||||||||||||| || ||||||||||| ||||| |||||||||||    
T  33032509 atttcatacggattttatttatggttgaagagaacatacgtacctgaactcgactgctccatatgaga 33032442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 112; Significance: 2e-56; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 23 - 194
Target Start/End: Original strand, 22366572 - 22366743
Alignment:
Q  23 acaacaaaagacagaaacctcatttttgaaactaatactacaaacatgaagtaaagtcccacatcgtttggtttaggcttatactaaatgtttatatact 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||  ||| ||||||||||||||||     
T  22366572 acaacaaaagacagaaacctcatttttgaaactaatactacaaacatgaaatatagtcccacatcgtttggttcaggaatatgctaaatgtttatataca 22366671  T
Q  123 ctacgcggtgagcaatggtcacgaccttacttgaacaggatctgttctataggatcgtactactgtgtcctt 194  Q
      | ||||  | |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  22366672 gcatgcggacaacaatagtcacgaccttatttgaacaggatctgttctataggatcgtactactgtgtcctt 22366743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 146 - 216
Target Start/End: Original strand, 26384421 - 26384491
Alignment:
Q  146 accttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttctaaggagacaggaaca 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  26384421 accttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttctaaggagacagaaaca 26384491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 418 - 485
Target Start/End: Original strand, 22366823 - 22366890
Alignment:
Q  418 atttcataaggattttaattacggttgaagagaacttaagtacctgaacttgactgatccatatgaga 485  Q
    |||||||| | |||||| ||| ||||||||||||| || |||||||||||||||||||||||||||||    
T  22366823 atttcatacgcattttatttatggttgaagagaacatacgtacctgaacttgactgatccatatgaga 22366890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 92; Significance: 2e-44; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 142 - 265
Target Start/End: Original strand, 10214390 - 10214513
Alignment:
Q  142 cacgaccttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttctaaggagacaggaacataaatctggatgaggatttgtgacc 241  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||  |||||  || || ||||||||    
T  10214390 cacgaccttacttgaacaggatctgttctataggattgtactactgtgtccttgatttctaaggagataggaacatatgtctggtagatgagttgtgacc 10214489  T
Q  242 gtgtgatcagagcgtgattaacgg 265  Q
    ||||||||||||||||||||||||    
T  10214490 gtgtgatcagagcgtgattaacgg 10214513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 142 - 265
Target Start/End: Complemental strand, 10101156 - 10101033
Alignment:
Q  142 cacgaccttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttctaaggagacaggaacataaatctggatgaggatttgtgacc 241  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||  || ||    |||||    
T  10101156 cacgaccttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttctaaggagacaggaacatacgtctggtggatgaaccatgacc 10101057  T
Q  242 gtgtgatcagagcgtgattaacgg 265  Q
    ||||||||||||||||||||||||    
T  10101056 gtgtgatcagagcgtgattaacgg 10101033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 142 - 265
Target Start/End: Original strand, 9678699 - 9678822
Alignment:
Q  142 cacgaccttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttctaaggagacaggaacataaatctggatgaggatttgtgacc 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  |||||  || || |  ||||     
T  9678699 cacgaccttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttcaaaggagacaggaacatacgtctggtggatgaatcatgact 9678798  T
Q  242 gtgtgatcagagcgtgattaacgg 265  Q
    ||||||||||||||||||||||||    
T  9678799 gtgtgatcagagcgtgattaacgg 9678822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 142 - 265
Target Start/End: Complemental strand, 10104959 - 10104836
Alignment:
Q  142 cacgaccttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttctaaggagacaggaacataaatctggatgaggatttgtgacc 241  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| |||||||| ||||  |||||  || ||    |||||    
T  10104959 cacgaccttacttgaacaggatctgttctataggattatactactgtgtccttgatttctaagaagacaggagcatacgtctggtggatgaaccatgacc 10104860  T
Q  242 gtgtgatcagagcgtgattaacgg 265  Q
    ||||||||||||||||||||||||    
T  10104859 gtgtgatcagagcgtgattaacgg 10104836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 143 - 216
Target Start/End: Complemental strand, 21036305 - 21036232
Alignment:
Q  143 acgaccttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttctaaggagacaggaaca 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  21036305 acgaccttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttctaaggaaacagaaaca 21036232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 143 - 216
Target Start/End: Complemental strand, 20982899 - 20982827
Alignment:
Q  143 acgaccttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttctaaggagacaggaaca 216  Q
    ||||||||||| |||||||||||| ||||||||||||||||| ||| |||||||||||||||||| || |||||    
T  20982899 acgaccttact-gaacaggatctgatctataggatcgtactattgtatccttgatttctaaggaggcacgaaca 20982827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 87; Significance: 2e-41; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 132 - 262
Target Start/End: Complemental strand, 41108244 - 41108114
Alignment:
Q  132 gagcaatggtcacgaccttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttctaaggagacaggaacataaatctggatgagg 231  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| |    
T  41108244 gagcaatagtcacgaccttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttctaaggagacaggaacatatgtctggatgatg 41108145  T
Q  232 atttgtgaccgtgtgatcagagcgtgattaa 262  Q
    |     |||| || |||||||||||||||||    
T  41108144 aacaaagaccatgcgatcagagcgtgattaa 41108114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 149 - 265
Target Start/End: Original strand, 7600923 - 7601038
Alignment:
Q  149 ttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttctaaggagacaggaacataaatctggatgaggatttgtgaccgtgtgat 248  Q
    ||||||| ||||||| ||||||||||| | |||| | ||||||||||||||||| ||| ||| ||||| || | |||  || || |  |||||||| |||    
T  7600923 ttacttggacaggatttgttctataggcttgtacaattgtgtccttgatttctagggaaacatgaacacaagt-tggtggatgaatcatgaccgtgagat 7601021  T
Q  249 cagagcgtgattaacgg 265  Q
    ||||| |||||||||||    
T  7601022 cagagagtgattaacgg 7601038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 145 - 271
Target Start/End: Original strand, 7224365 - 7224491
Alignment:
Q  145 gaccttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttctaaggagacaggaacataaatctggatgaggatttgtgaccgtg 244  Q
    |||||||||| || | ||| |||||||||||||||||  | || |||||||||||||||||||||| ||||||||||||||||||||| || |||  |||    
T  7224365 gaccttacttaaatatgatttgttctataggatcgtaacattgcgtccttgatttctaaggagacatgaacataaatctggatgaggaattatgaatgtg 7224464  T
Q  245 tgatcagagcgtgattaacggttctat 271  Q
    |||| ||||| ||||||||||||||||    
T  7224465 tgattagagcatgattaacggttctat 7224491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 143 - 203
Target Start/End: Complemental strand, 1086970 - 1086910
Alignment:
Q  143 acgaccttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttctaa 203  Q
    ||||||||||||||||| ||||| || |||| |||||||||| ||||||||||||||||||    
T  1086970 acgaccttacttgaacaagatctattttataagatcgtactattgtgtccttgatttctaa 1086910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 143 - 203
Target Start/End: Original strand, 5130615 - 5130675
Alignment:
Q  143 acgaccttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttctaa 203  Q
    ||||||||||||||||| ||||| || |||||||||||| |||||||||||||||||||||    
T  5130615 acgaccttacttgaacaagatctcttttataggatcgtattactgtgtccttgatttctaa 5130675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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