View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4111_low_14 (Length: 474)
Name: NF4111_low_14
Description: NF4111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4111_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 455
Target Start/End: Original strand, 28521978 - 28522426
Alignment:
| Q |
1 |
aaaacatgactatggtaccgtttagtctgacttttttatgatctaaaagttacttgaaaataagagttgaaagaaagactttaaaaataaatcacacatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||| |
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| T |
28521978 |
aaaacatgactatggtaccgtttagtctgactttattacggtctaaaagttacttgaaaataaaagttgaaagaaagactttaaaaataaagcacgtatt |
28522077 |
T |
|
| Q |
101 |
gatgtcgactcaattataataggaggactatnnnnnnnngtgatttacaattttttgtttgtttgaaggaataaacaagtgttgaatgttgacataatta |
200 |
Q |
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| T |
28522078 |
gatgtcgacacaattataataggaggactataaaaaa--gtgatttacatttttttttttt----aaggaataaacaagtgttgaatgttgacctaatta |
28522171 |
T |
|
| Q |
201 |
attatttatgtacttttatatcattcacacgtttttaaatatatttagggagacctaatacatttataaggtaggacaaatggagtaagtaaaaaggaat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
28522172 |
attatttatgtacttttatatcattcacacgtttttaaatatatttagggagacctaatacattcataaggtaggacaaatggagtaagtaaaaaggaat |
28522271 |
T |
|
| Q |
301 |
caattnnnnnnnnnnngaataatggtcaaacaagaaagacataggatttctataagttccatagcaaaatgcaaattgtaaatcatcttttatacacatc |
400 |
Q |
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||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28522272 |
caattaaaaaaaaaaagaataatggtcaaacaagaaagacatgggatttctataagttccatagcaaaatgcaaattgtaaatcatcttttatacacatc |
28522371 |
T |
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| Q |
401 |
aaggagcattattatctcctctactcactccattaaggtaaataaacaactaacc |
455 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
28522372 |
aaggagcattattatctcctctactcacttcattaaggtaaataaacaactaacc |
28522426 |
T |
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