View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4111_low_15 (Length: 460)
Name: NF4111_low_15
Description: NF4111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4111_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 47043253 - 47043528
Alignment:
| Q |
1 |
attttgatttcacaagtttcatataattaagggcatgccactgtattttctatttatttgtctgcatgcaccgggttagccccaccgccacgactctcca |
100 |
Q |
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|||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |
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| T |
47043253 |
attttgatttcacaagtttcatatcattaaaggcatgccactgtattttctatttatttgtctgcatgcacctggttagctccaccgccacgactctcca |
47043352 |
T |
|
| Q |
101 |
tggtcacattacaattaacatacgtctccttttggctccctgaagatgtgtttcccataaaagagaaccgttaagcatcacattagacaaattttaccat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47043353 |
tggtcacattacaattaacatacgtctccttttggctccctgaagatgtgtttcccataaaagagaaccgttaagcatcacattagacaaattttaccat |
47043452 |
T |
|
| Q |
201 |
ggcgatacctatgaaatcgacggtcacgttatcatagtaaaaatatgcattgataaaataaaaatgtaatcctgac |
276 |
Q |
| |
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||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47043453 |
ggccatccctatgaaatcgacggtcacgttatcatagtaaaaatatgcattgataaaataaaaatgtaatcctgac |
47043528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 307 - 452
Target Start/End: Original strand, 47043557 - 47043702
Alignment:
| Q |
307 |
aaagaataatcttctatttaaactgaaaataacattcataaatacaaaaaatagtcatcattataacaaattccaaaacctgagagttaaagttagagac |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47043557 |
aaagaataatcttctatttaaactgaaaataacattcataaatacaaaaaatagtcatcattataacaaattccaaaacctgagagttaaagttagagac |
47043656 |
T |
|
| Q |
407 |
gtccaacttgcaactacaacaactacggtgtggctacttgatgatg |
452 |
Q |
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| T |
47043657 |
gtccaacttgcaactacaacaactacggtgtggctacttgatgatg |
47043702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 307 - 341
Target Start/End: Original strand, 17902294 - 17902328
Alignment:
| Q |
307 |
aaagaataatcttctatttaaactgaaaataacat |
341 |
Q |
| |
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|||||||||||||||||||||| |||||||||||| |
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| T |
17902294 |
aaagaataatcttctatttaaattgaaaataacat |
17902328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 307 - 343
Target Start/End: Original strand, 1112500 - 1112536
Alignment:
| Q |
307 |
aaagaataatcttctatttaaactgaaaataacattc |
343 |
Q |
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||||| |||||||||||||||| |||||||||||||| |
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| T |
1112500 |
aaagattaatcttctatttaaattgaaaataacattc |
1112536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 307 - 340
Target Start/End: Original strand, 23688387 - 23688420
Alignment:
| Q |
307 |
aaagaataatcttctatttaaactgaaaataaca |
340 |
Q |
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|||||||||||||||||||||| ||||||||||| |
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|
| T |
23688387 |
aaagaataatcttctatttaaattgaaaataaca |
23688420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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