View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4111_low_18 (Length: 444)
Name: NF4111_low_18
Description: NF4111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4111_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 15 - 430
Target Start/End: Complemental strand, 40839268 - 40838853
Alignment:
| Q |
15 |
cagagacctttgggccatccaacaactcttcacaatgtagatagcactgagactatagacttgacttcccccgatggtcgcagccggggacagaaactga |
114 |
Q |
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| T |
40839268 |
cagagacctttgggccatccaacaactcttcacaatgtagatagcactgagactatagacttgacttcaaccgatggtcgcagccggggacagaagctga |
40839169 |
T |
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| Q |
115 |
gtttccttcgatcggtaacaatcctttttcttctatgctactatgttgactactcaatcatggttttaaattgtggtttaggtgtgattgttcttataca |
214 |
Q |
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| T |
40839168 |
gtttccttcgatcggtaacaatcctttttcttctatgctactatgttgactactcaatcatggttttaaattgtggtttaggtgtgattgttcttataca |
40839069 |
T |
|
| Q |
215 |
acaaatattttttacaccgtcaatcaaaataccatcacgagatcataaaattgcttgacatttatcataattacttctcccattatacatataataatat |
314 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
40839068 |
acaaatattttttacaccgtcaatcaaaataccatcgcgagatcataaaattgcttgacatttatcataactacttctcccattatacatataataatat |
40838969 |
T |
|
| Q |
315 |
attgattgtgaatgtgatttattgacgaaaaatcttatttatgtattgaaatttaggtacatggagttctaaacattatagggtggggaacattgttacc |
414 |
Q |
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| T |
40838968 |
actgattgtgaatgtgatttattgacgaaaaatcttatttatgtattgaaatttaggtacatggagttctaaacattatagggtggggaacgttgttacc |
40838869 |
T |
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| Q |
415 |
tatgggagtaataatt |
430 |
Q |
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| T |
40838868 |
tatgggagtaataatt |
40838853 |
T |
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