View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4111_low_21 (Length: 420)
Name: NF4111_low_21
Description: NF4111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4111_low_21 |
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| [»] chr4 (10 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 386; Significance: 0; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 19 - 420
Target Start/End: Complemental strand, 27571336 - 27570936
Alignment:
| Q |
19 |
ggattgtaatagagtctagttaggtacaagggttcacatggtattgtcttatagaggtcattttcaaggattagatgaagctaaatataagaacatgcaa |
118 |
Q |
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| T |
27571336 |
ggattgtaatagagtctagttaggtacaagggttcacatggtattgtcttatagaggtcattttcaaggattagatgaagctaaatataagaacatgcaa |
27571237 |
T |
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| Q |
119 |
atactctaccttctgagataatggccaacagacatggtaaaacaatgcattggtgaaaaagacctgatgtttgttaatgcattttggtatagttgatcca |
218 |
Q |
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| T |
27571236 |
atactctaccttctgagataatggccaacagacatggtaaaacaatgcattggtgaaaaagacctgatgtttgttaatgcattttgg-atagttgatcca |
27571138 |
T |
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| Q |
219 |
ctggtagacatactacagacatatctcatgtttcttcagattgacaatgcacaatatacatcagccaactattatctgatatatctgcaatttgtaaatc |
318 |
Q |
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| T |
27571137 |
ctggtagacatactacagacatatctcatgtttcttcagattgacaatgcacaatatacatcagccaactattatctgatatatcttcaatttgtaaatc |
27571038 |
T |
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| Q |
319 |
atgagtaggacctgaattatagatcagaaacagtgttaggaggcaagaagagaaccaatattaaacgcaagatcacaaacgactatgaaccacgttttat |
418 |
Q |
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| T |
27571037 |
atgagtaggacctgaattatagatcagaagcagtgttaggaggcaagaagagaaccaatattaaacgcaagatcacaaacgactatgaaccacgttttat |
27570938 |
T |
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| Q |
419 |
at |
420 |
Q |
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| T |
27570937 |
at |
27570936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 34 - 122
Target Start/End: Original strand, 27422360 - 27422448
Alignment:
| Q |
34 |
ctagttaggtacaagggttcacatggtattgtcttatagaggtcattttcaaggattagatgaagctaaatataagaacatgcaaatac |
122 |
Q |
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| T |
27422360 |
ctagtgagggacaagagatcacatggtattgtcttatagaagtcattttcaaggattagatgaagttaaatggaagaacatgcaaatac |
27422448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 297 - 393
Target Start/End: Original strand, 27414960 - 27415055
Alignment:
| Q |
297 |
atatatctgcaatttgtaaatcatgagtaggacctgaattatagatcagaaacagtgttaggaggcaagaagagaaccaatattaaacgcaagatca |
393 |
Q |
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| T |
27414960 |
atatatgtgcaacttgtaaagcttgagtaggacctgatttatagctcagaaacagtgtgaggagg-aaaaagagaaccaattttgaacacaagatca |
27415055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 34 - 127
Target Start/End: Original strand, 27414715 - 27414809
Alignment:
| Q |
34 |
ctagttaggtacaagggttcacatggtattgtcttatagaggtcattttc-aaggattagatgaagctaaatataagaacatgcaaatactctac |
127 |
Q |
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| T |
27414715 |
ctagtgagggacaagggatcacatggtattgtcctatagaagtcattttcaaactattagatgaagctaaatggaagaacatgcacataccctac |
27414809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 310 - 420
Target Start/End: Original strand, 27425216 - 27425326
Alignment:
| Q |
310 |
ttgtaaatcatgagtaggacctgaattatagatcagaaacagtgttaggaggcaagaagagaaccaatattaaacgcaagatcacaaacgactatgaacc |
409 |
Q |
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||||||| | || ||||||||||| |||||| |||||| ||||||||||||| || | |||||| |||||| ||| ||||||||||||| || | ||||| |
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| T |
27425216 |
ttgtaaagcttgcgtaggacctgatttatagttcagaagcagtgttaggaggaaaaacgagaacaaatattgaacacaagatcacaaaccaccaggaacc |
27425315 |
T |
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| Q |
410 |
acgttttatat |
420 |
Q |
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|| ||||||| |
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| T |
27425316 |
acaatttatat |
27425326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 160 - 269
Target Start/End: Original strand, 27419645 - 27419754
Alignment:
| Q |
160 |
acaatgcattggtgaaaaagacctgatgtttgttaatgcattttggtatagttgatccactggtagacatactacagacatatctcatgtttcttcagat |
259 |
Q |
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|||||||| |||||||| | ||||||||||| || ||||||| ||||||| | ||||| | |||||||| || |||||| || ||||||||||| || |
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| T |
27419645 |
acaatgcaatggtgaaagaaacctgatgttttttcttgcatttgggtatagataatccaattgtagacatgctttagacatctcacatgtttcttctaat |
27419744 |
T |
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| Q |
260 |
tgacaatgca |
269 |
Q |
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| T |
27419745 |
tgacattgca |
27419754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 60 - 122
Target Start/End: Original strand, 27424962 - 27425026
Alignment:
| Q |
60 |
tattgtcttatagaggtcattttcaaggat--tagatgaagctaaatataagaacatgcaaatac |
122 |
Q |
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| T |
27424962 |
tattgtcttatagaagtcattttcaaggattatagatgaagttaaatggaagaacattcaaatac |
27425026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 363 - 420
Target Start/End: Complemental strand, 27566634 - 27566577
Alignment:
| Q |
363 |
aagaagagaaccaatattaaacgcaagatcacaaacgactatgaaccacgttttatat |
420 |
Q |
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| T |
27566634 |
aagaagagaaccaatatagaacacaagatcacaaaccactataaaccacattttatat |
27566577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 47 - 122
Target Start/End: Complemental strand, 27566945 - 27566870
Alignment:
| Q |
47 |
agggttcacatggtattgtcttatagaggtcattttcaaggattagatgaagctaaatataagaacatgcaaatac |
122 |
Q |
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|||| |||||||| ||||| | || || |||||||||||| ||||||||||| ||||| ||||||||||| |||| |
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| T |
27566945 |
agggatcacatggcattgtatcatggaagtcattttcaagcattagatgaagataaatggaagaacatgcacatac |
27566870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 167 - 229
Target Start/End: Original strand, 27425068 - 27425130
Alignment:
| Q |
167 |
attggtgaaaaagacctgatgtttgttaatgcattttggtatagttgatccactggtagacat |
229 |
Q |
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|||||||||| | ||||||||||||||| || |||||||||||| | || || |||||||||| |
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| T |
27425068 |
attggtgaaagaaacctgatgtttgttattgaattttggtatagctaatgcaatggtagacat |
27425130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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