View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4111_low_22 (Length: 404)
Name: NF4111_low_22
Description: NF4111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4111_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 11 - 387
Target Start/End: Complemental strand, 34387590 - 34387214
Alignment:
| Q |
11 |
cacagattaacaatgaaatttccaattcgaatgaagacgagaatgttgggttgacaatttggaggttaccgggtggagggtttgccgttggaagattttc |
110 |
Q |
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| T |
34387590 |
cacaaattaacaatgaaatttccaattcgaatgaagacgagaatgttgggttgacaatttggaggttaccgggtggagggtttgccgttggaagattttc |
34387491 |
T |
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| Q |
111 |
tggtgatggaggtgggggtgagaatagaatggagcatcctattgtttacacagaagtggatggtgcatttaacaatgttggagaaccaagaaggatttca |
210 |
Q |
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| T |
34387490 |
tggtgacggaggtgggggtgagaatagaatggagcatcctattgtttacacagaagtggatggtgcatttaacaatgttggagaaccaagaaggatttca |
34387391 |
T |
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| Q |
211 |
tggtcattgacatcatctagaggagggataggaagaagtagagggggtgcatttcgtagaatgttgagcaatttgtttggatgtttgagaggaggtggag |
310 |
Q |
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| T |
34387390 |
tggtcattgacatcatctagaggagggataggaagaagtagagggggtgcatttcgtagaatgttgagcaatttgtttggatgtttgagaggaggtggag |
34387291 |
T |
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| Q |
311 |
ttaggaatcaacattctccttttactactagagagtttcctcaacctatgaccatgagaaataatagtgcatttcat |
387 |
Q |
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| T |
34387290 |
ttaggaatcaacattctccttttactactagagagtttcctcaacctatgaccatgagaaataatagtgcatctcat |
34387214 |
T |
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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 108
Target Start/End: Complemental strand, 41697456 - 41697403
Alignment:
| Q |
55 |
gttgggttgacaatttggaggttaccgggtggagggtttgccgttggaagattt |
108 |
Q |
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| T |
41697456 |
gttggattgacaatatggaggttaccgggaggtggatttgctgttggaagattt |
41697403 |
T |
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