View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4111_low_24 (Length: 393)

Name: NF4111_low_24
Description: NF4111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4111_low_24
NF4111_low_24
[»] chr2 (29 HSPs)
chr2 (16-392)||(39788464-39788840)
chr2 (230-318)||(6177774-6177862)
chr2 (233-318)||(41643874-41643959)
chr2 (235-318)||(18947559-18947642)
chr2 (230-318)||(19073356-19073445)
chr2 (245-318)||(18779362-18779435)
chr2 (231-268)||(22963400-22963437)
chr2 (231-268)||(22998040-22998077)
chr2 (228-276)||(19424786-19424834)
chr2 (230-276)||(19093412-19093458)
chr2 (232-318)||(42005390-42005476)
chr2 (231-276)||(19313852-19313897)
chr2 (318-383)||(34441786-34441851)
chr2 (231-276)||(41465509-41465554)
chr2 (232-276)||(13711465-13711509)
chr2 (230-318)||(34441882-34441970)
chr2 (229-276)||(5881532-5881579)
chr2 (243-318)||(27138982-27139056)
chr2 (229-266)||(11366549-11366586)
chr2 (326-383)||(15650976-15651033)
chr2 (231-268)||(26357577-26357614)
chr2 (231-276)||(33551144-33551189)
chr2 (233-274)||(36641988-36642029)
chr2 (326-383)||(41644000-41644057)
chr2 (229-266)||(43446475-43446512)
chr2 (228-276)||(17054254-17054302)
chr2 (228-276)||(17071895-17071943)
chr2 (315-383)||(30844964-30845032)
chr2 (328-380)||(38250000-38250052)
[»] chr3 (33 HSPs)
chr3 (230-318)||(40640595-40640683)
chr3 (229-316)||(45879461-45879548)
chr3 (234-318)||(38392589-38392673)
chr3 (232-311)||(32180715-32180794)
chr3 (231-316)||(49359591-49359676)
chr3 (231-317)||(47930628-47930714)
chr3 (232-311)||(19606882-19606961)
chr3 (245-318)||(7568680-7568753)
chr3 (233-318)||(44880794-44880878)
chr3 (319-383)||(7568582-7568646)
chr3 (315-383)||(51878231-51878299)
chr3 (229-266)||(3655352-3655389)
chr3 (230-279)||(22450958-22451007)
chr3 (326-383)||(32180614-32180671)
chr3 (326-383)||(38392491-38392548)
chr3 (326-383)||(49359491-49359548)
chr3 (229-276)||(7327623-7327670)
chr3 (232-267)||(14586795-14586830)
chr3 (228-311)||(18272192-18272274)
chr3 (229-276)||(26941400-26941447)
chr3 (233-276)||(53818512-53818555)
chr3 (230-276)||(21193596-21193642)
chr3 (230-276)||(35844316-35844362)
chr3 (230-268)||(53175713-53175751)
chr3 (231-268)||(4015451-4015488)
chr3 (231-276)||(20373436-20373481)
chr3 (229-266)||(40552409-40552446)
chr3 (233-266)||(43976035-43976068)
chr3 (231-276)||(51213121-51213166)
chr3 (230-266)||(21009955-21009991)
chr3 (232-276)||(29163839-29163883)
chr3 (318-381)||(40640496-40640562)
chr3 (327-383)||(44880919-44880975)
[»] chr5 (24 HSPs)
chr5 (229-318)||(36055835-36055924)
chr5 (232-311)||(10237415-10237494)
chr5 (230-318)||(22616493-22616580)
chr5 (233-311)||(41417547-41417625)
chr5 (229-276)||(13380493-13380540)
chr5 (232-310)||(21320752-21320830)
chr5 (229-276)||(39572817-39572864)
chr5 (230-276)||(8742017-8742063)
chr5 (326-383)||(22616621-22616678)
chr5 (231-279)||(14409453-14409501)
chr5 (229-276)||(9200231-9200278)
chr5 (320-383)||(21320873-21320936)
chr5 (230-276)||(5112443-5112489)
chr5 (230-276)||(19119858-19119904)
chr5 (317-383)||(33163634-33163700)
chr5 (231-276)||(7693230-7693275)
chr5 (326-383)||(12081130-12081187)
chr5 (229-266)||(12164929-12164966)
chr5 (318-383)||(13380619-13380684)
chr5 (326-383)||(25653712-25653769)
chr5 (331-383)||(13887374-13887426)
chr5 (232-276)||(22980794-22980838)
chr5 (230-266)||(24886101-24886137)
chr5 (270-318)||(31878422-31878470)
[»] chr6 (17 HSPs)
chr6 (230-318)||(19631748-19631836)
chr6 (317-383)||(26301788-26301854)
chr6 (228-318)||(30338473-30338563)
chr6 (326-383)||(11084017-11084074)
chr6 (230-318)||(11084113-11084201)
chr6 (230-318)||(26301884-26301972)
chr6 (229-276)||(7055354-7055401)
chr6 (232-279)||(20768087-20768134)
chr6 (230-276)||(8513232-8513278)
chr6 (228-276)||(3880078-3880126)
chr6 (233-281)||(6614034-6614082)
chr6 (233-276)||(30353497-30353540)
chr6 (230-276)||(4318962-4319008)
chr6 (230-276)||(5627390-5627436)
chr6 (231-276)||(24662193-24662238)
chr6 (230-266)||(1945832-1945868)
chr6 (231-279)||(7235170-7235218)
[»] chr4 (29 HSPs)
chr4 (233-316)||(2266819-2266902)
chr4 (230-311)||(2704511-2704592)
chr4 (234-307)||(17612338-17612411)
chr4 (232-318)||(51204580-51204670)
chr4 (231-276)||(55241270-55241315)
chr4 (232-276)||(4597994-4598038)
chr4 (231-279)||(28003149-28003197)
chr4 (230-318)||(54995760-54995848)
chr4 (233-316)||(20097450-20097537)
chr4 (230-276)||(32912746-32912792)
chr4 (230-276)||(34361657-34361703)
chr4 (228-266)||(37663915-37663953)
chr4 (230-276)||(38812263-38812309)
chr4 (230-279)||(32579443-32579492)
chr4 (230-279)||(38011853-38011902)
chr4 (233-276)||(27396618-27396661)
chr4 (328-383)||(33036065-33036120)
chr4 (233-268)||(34948271-34948306)
chr4 (233-276)||(52516599-52516642)
chr4 (230-276)||(4396325-4396371)
chr4 (230-276)||(35021201-35021247)
chr4 (315-381)||(54995664-54995730)
chr4 (326-383)||(2266719-2266776)
chr4 (326-383)||(2708001-2708058)
chr4 (233-302)||(33255501-33255570)
chr4 (231-276)||(38811813-38811858)
chr4 (231-276)||(39397918-39397963)
chr4 (233-317)||(9743590-9743674)
chr4 (230-266)||(25701233-25701269)
[»] chr7 (21 HSPs)
chr7 (231-318)||(23402332-23402419)
chr7 (240-318)||(22955273-22955351)
chr7 (247-318)||(37854255-37854326)
chr7 (231-318)||(4902340-4902427)
chr7 (232-279)||(48928701-48928748)
chr7 (231-276)||(5657622-5657667)
chr7 (231-276)||(6546494-6546539)
chr7 (245-318)||(7742933-7743006)
chr7 (233-276)||(25691686-25691729)
chr7 (318-383)||(5781636-5781701)
chr7 (232-276)||(24211717-24211761)
chr7 (230-266)||(30055500-30055536)
chr7 (327-383)||(49002353-49002409)
chr7 (231-311)||(8133527-8133609)
chr7 (230-273)||(26524471-26524514)
chr7 (230-276)||(17842727-17842773)
chr7 (230-276)||(18797303-18797349)
chr7 (231-268)||(8861260-8861297)
chr7 (231-276)||(37109847-37109892)
chr7 (230-307)||(40381939-40382016)
chr7 (230-262)||(9355981-9356013)
[»] scaffold0200 (1 HSPs)
scaffold0200 (228-318)||(24778-24868)
[»] chr1 (26 HSPs)
chr1 (247-316)||(16127536-16127605)
chr1 (228-312)||(13876886-13876970)
chr1 (229-316)||(16132473-16132560)
chr1 (230-276)||(32267029-32267075)
chr1 (231-281)||(43579242-43579292)
chr1 (326-383)||(16132603-16132660)
chr1 (268-316)||(10758263-10758311)
chr1 (231-279)||(31621685-31621733)
chr1 (232-279)||(14758038-14758085)
chr1 (230-276)||(1547282-1547328)
chr1 (326-383)||(10758163-10758220)
chr1 (231-276)||(23999343-23999388)
chr1 (326-383)||(27118458-27118515)
chr1 (230-278)||(4150488-4150536)
chr1 (229-276)||(18422645-18422692)
chr1 (230-276)||(11742485-11742531)
chr1 (230-276)||(16415640-16415686)
chr1 (233-279)||(33725732-33725778)
chr1 (230-276)||(37619031-37619077)
chr1 (318-383)||(13876782-13876847)
chr1 (231-316)||(27118330-27118415)
chr1 (229-266)||(30254418-30254455)
chr1 (229-266)||(30254852-30254889)
chr1 (231-268)||(38823210-38823247)
chr1 (231-276)||(47682628-47682673)
chr1 (315-383)||(15964217-15964285)
[»] chr8 (20 HSPs)
chr8 (230-311)||(4108880-4108961)
chr8 (229-276)||(1150251-1150298)
chr8 (315-382)||(3038523-3038590)
chr8 (230-276)||(1204925-1204971)
chr8 (232-278)||(3858849-3858895)
chr8 (231-276)||(15009241-15009286)
chr8 (229-268)||(7998360-7998399)
chr8 (232-318)||(23176724-23176811)
chr8 (229-276)||(27082984-27083031)
chr8 (229-276)||(30654729-30654776)
chr8 (240-318)||(8151373-8151451)
chr8 (230-268)||(39099263-39099301)
chr8 (326-383)||(4108777-4108834)
chr8 (231-276)||(4133154-4133199)
chr8 (231-276)||(5300092-5300137)
chr8 (326-383)||(6267368-6267425)
chr8 (233-278)||(6446707-6446752)
chr8 (229-318)||(7290718-7290806)
chr8 (231-276)||(13307622-13307667)
chr8 (231-279)||(33906223-33906271)
[»] scaffold0262 (1 HSPs)
scaffold0262 (315-381)||(12031-12097)
[»] scaffold0009 (1 HSPs)
scaffold0009 (229-276)||(42346-42393)
[»] scaffold0050 (1 HSPs)
scaffold0050 (326-383)||(5718-5775)
[»] scaffold0312 (1 HSPs)
scaffold0312 (230-311)||(9099-9184)


Alignment Details
Target: chr2 (Bit Score: 336; Significance: 0; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 16 - 392
Target Start/End: Complemental strand, 39788840 - 39788464
Alignment:
Q  16 caggtttaactgatttgagtcatataattagtttaagtgtgtagtaatcgattaatttacttgaccaacaaaatcaattaatttagtgagcaagaccatt 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  39788840 caggtttaactgatttgagtcatataattagtttaagtgtgtagtaatcgattaatttacttgaccaacaaaatgaattaatttagtgagcaagaccatt 39788741  T
Q  116 agtgtatggtaaaagtccatttattattgggtttttcaatttctacaaattaagaagttctaaatttgtatgcattttatatttaatatataactttcac 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39788740 agtgtatggtaaaagtccatttattattgggtttttcaatttctacaaattaagaagttctaaatttgtatgcattttatatttaatatataactttcac 39788641  T
Q  216 ccgatnnnnnnngtaggaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaatccat 315  Q
    |||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||    
T  39788640 ccgataaaaaaagtaggaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatagtcaatcattgagcatttgtgtatttaatccat 39788541  T
Q  316 gtccataaaatgtgtcattatattgttacttactgcaattatgtctctggttaaatcaaaattaaacacaggttctg 392  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||    
T  39788540 gtccataaaatgtgtcattatattgttacttactgcaattatgtctctggttaaatcaaaattaaacatagattctg 39788464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 230 - 318
Target Start/End: Original strand, 6177774 - 6177862
Alignment:
Q  230 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaatccatgtc 318  Q
    ||||||||| || || |||||||| |||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||| ||||||    
T  6177774 aggaaaattctacggcgaagtcatgagaatgacttttctggtgaagttaaatggtcaatcattgagcatttgtgtatttaattcatgtc 6177862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 233 - 318
Target Start/End: Original strand, 41643874 - 41643959
Alignment:
Q  233 aaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaatccatgtc 318  Q
    |||||| |||||||||||||| | |||||||||| | ||||||| |||||||| ||||||||||||||||||||||||| ||||||    
T  41643874 aaaattctatggtgaagtcatgataatgacttttttggtgaagttaaatggtcaatcattgagcatttgtgtatttaattcatgtc 41643959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 235 - 318
Target Start/End: Complemental strand, 18947642 - 18947559
Alignment:
Q  235 aattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaatccatgtc 318  Q
    |||| |||||||||||||| | ||| |||||||| ||||||| |||||||| |||||||| |||||||||||||||||||||||    
T  18947642 aattctatggtgaagtcatgaaaataacttttctggtgaagttaaatggtcaatcattgaacatttgtgtatttaatccatgtc 18947559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 230 - 318
Target Start/End: Original strand, 19073356 - 19073445
Alignment:
Q  230 aggaaaattttatggtgaagtcataagaatgacttttctag-tgaagtcaaatggtcgatcattgagcatttgtgtatttaatccatgtc 318  Q
    ||||||||| ||||||||||| || ||||||| |||| | | |||||| |||||||| ||||||||| ||||||||||||||||||||||    
T  19073356 aggaaaattctatggtgaagttatgagaatgattttttttggtgaagttaaatggtcaatcattgagaatttgtgtatttaatccatgtc 19073445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 245 - 318
Target Start/End: Complemental strand, 18779435 - 18779362
Alignment:
Q  245 tgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaatccatgtc 318  Q
    ||||||||||| |||||||||  |  |||||| |||||||| ||||||||||||||||||||||||| ||||||    
T  18779435 tgaagtcataaaaatgactttattgatgaagttaaatggtcaatcattgagcatttgtgtatttaattcatgtc 18779362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 231 - 268
Target Start/End: Original strand, 22963400 - 22963437
Alignment:
Q  231 ggaaaattttatggtgaagtcataagaatgacttttct 268  Q
    ||||||||||||||||||||||||||||||||||||||    
T  22963400 ggaaaattttatggtgaagtcataagaatgacttttct 22963437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 231 - 268
Target Start/End: Complemental strand, 22998077 - 22998040
Alignment:
Q  231 ggaaaattttatggtgaagtcataagaatgacttttct 268  Q
    ||||||||||||||||||||||||||||||||||||||    
T  22998077 ggaaaattttatggtgaagtcataagaatgacttttct 22998040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 228 - 276
Target Start/End: Complemental strand, 19424834 - 19424786
Alignment:
Q  228 gtaggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 276  Q
    |||||||||||||||||||||||||| |||||| ||||||| |||||||    
T  19424834 gtaggaaaattttatggtgaagtcatgagaatggcttttctggtgaagt 19424786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 276
Target Start/End: Original strand, 19093412 - 19093458
Alignment:
Q  230 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 276  Q
    |||||||||||||||||||||||| ||||||| |||||| |||||||    
T  19093412 aggaaaattttatggtgaagtcatgagaatgatttttctggtgaagt 19093458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 318
Target Start/End: Original strand, 42005390 - 42005476
Alignment:
Q  232 gaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaatccatgtc 318  Q
    ||||||| |||||||||||||| | ||||| |||| | ||||||| ||||| || | ||||||  |||||| |||||||||||||||    
T  42005390 gaaaattctatggtgaagtcatgaaaatgatttttttggtgaagttaaatgatcaaccattgaatatttgtttatttaatccatgtc 42005476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 231 - 276
Target Start/End: Original strand, 19313852 - 19313897
Alignment:
Q  231 ggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 276  Q
    |||||||| |||||||||||||| |||||||||||||| |||||||    
T  19313852 ggaaaattctatggtgaagtcattagaatgacttttctggtgaagt 19313897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 318 - 383
Target Start/End: Complemental strand, 34441851 - 34441786
Alignment:
Q  318 ccataaaatgtgtcattatattgttacttactgcaattatgtctctggttaaatcaaaattaaaca 383  Q
    |||||| ||||||| ||||||  ||||||| ||||||| |||| ||| ||||||||||||||||||    
T  34441851 ccataagatgtgtcgttatatctttacttattgcaattgtgtccctgattaaatcaaaattaaaca 34441786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 231 - 276
Target Start/End: Original strand, 41465509 - 41465554
Alignment:
Q  231 ggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 276  Q
    |||||||| |||||||||||||| |||||||||||||| |||||||    
T  41465509 ggaaaattctatggtgaagtcatgagaatgacttttctggtgaagt 41465554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 276
Target Start/End: Original strand, 13711465 - 13711509
Alignment:
Q  232 gaaaattttatggtgaagtcataagaatgacttttctagtgaagt 276  Q
    ||||||| |||||||||||||| |||||||||||||| |||||||    
T  13711465 gaaaattctatggtgaagtcatcagaatgacttttctggtgaagt 13711509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 318
Target Start/End: Complemental strand, 34441970 - 34441882
Alignment:
Q  230 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaatccatgtc 318  Q
    ||||||||| |||||||||||||| | |||||||||| | || |||| |||||  | || |||||  ||||||||||||||| ||||||    
T  34441970 aggaaaattctatggtgaagtcatgaaaatgacttttttggtaaagttaaatgaccaattattgaatatttgtgtatttaattcatgtc 34441882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 229 - 276
Target Start/End: Original strand, 5881532 - 5881579
Alignment:
Q  229 taggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 276  Q
    |||||||||||||| |||||||||| | |||||||||||| |||||||    
T  5881532 taggaaaattttattgtgaagtcattaaaatgacttttctggtgaagt 5881579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 243 - 318
Target Start/End: Complemental strand, 27139056 - 27138982
Alignment:
Q  243 ggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaatccatgtc 318  Q
    ||||||||||| | |||||||||| |  |||||| |||||| | |||||||| |||||||||| ||||||||||||    
T  27139056 ggtgaagtcatgaaaatgacttttttgatgaagttaaatggccaatcattgatcatttgtgta-ttaatccatgtc 27138982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 266
Target Start/End: Complemental strand, 11366586 - 11366549
Alignment:
Q  229 taggaaaattttatggtgaagtcataagaatgactttt 266  Q
    |||||||||| ||||||||| |||||||||||||||||    
T  11366586 taggaaaattctatggtgaaatcataagaatgactttt 11366549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 326 - 383
Target Start/End: Original strand, 15650976 - 15651033
Alignment:
Q  326 tgtgtcattatattgttacttactgcaattatgtctctggttaaatcaaaattaaaca 383  Q
    |||||||||||||  ||||||| ||||||| |||  ||| ||||||||||||||||||    
T  15650976 tgtgtcattatatctttacttattgcaattgtgttcctgattaaatcaaaattaaaca 15651033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 268
Target Start/End: Original strand, 26357577 - 26357614
Alignment:
Q  231 ggaaaattttatggtgaagtcataagaatgacttttct 268  Q
    ||||||||||||||||||||||| | ||||||||||||    
T  26357577 ggaaaattttatggtgaagtcatgaaaatgacttttct 26357614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 276
Target Start/End: Complemental strand, 33551189 - 33551144
Alignment:
Q  231 ggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 276  Q
    |||||||| || ||||||||||| |||||||||||| |||||||||    
T  33551189 ggaaaattctacggtgaagtcatgagaatgacttttttagtgaagt 33551144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 274
Target Start/End: Original strand, 36641988 - 36642029
Alignment:
Q  233 aaaattttatggtgaagtcataagaatgacttttctagtgaa 274  Q
    |||||| |||||||||||||| |||||||||||||| |||||    
T  36641988 aaaattctatggtgaagtcatgagaatgacttttctggtgaa 36642029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 326 - 383
Target Start/End: Original strand, 41644000 - 41644057
Alignment:
Q  326 tgtgtcattatattgttacttactgcaattatgtctctggttaaatcaaaattaaaca 383  Q
    |||||||||||||  ||||||| ||||||| | || ||| ||||||||||||||||||    
T  41644000 tgtgtcattatatctttacttattgcaattgtatccctgattaaatcaaaattaaaca 41644057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 266
Target Start/End: Complemental strand, 43446512 - 43446475
Alignment:
Q  229 taggaaaattttatggtgaagtcataagaatgactttt 266  Q
    |||||||||| |||||||||||||| ||||||||||||    
T  43446512 taggaaaattctatggtgaagtcatgagaatgactttt 43446475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 276
Target Start/End: Complemental strand, 17054302 - 17054254
Alignment:
Q  228 gtaggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 276  Q
    ||||||||||| ||||||||||||||  ||||||||||| | |||||||    
T  17054302 gtaggaaaattctatggtgaagtcatgcgaatgacttttttggtgaagt 17054254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 276
Target Start/End: Complemental strand, 17071943 - 17071895
Alignment:
Q  228 gtaggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 276  Q
    ||||||||||| ||||||||||||||  ||||||||||| | |||||||    
T  17071943 gtaggaaaattctatggtgaagtcatgcgaatgacttttttggtgaagt 17071895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 315 - 383
Target Start/End: Original strand, 30844964 - 30845032
Alignment:
Q  315 tgtccataaaatgtgtcattatattgttacttactgcaattatgtctctggttaaatcaaaattaaaca 383  Q
    ||||||||| ||||||||||| ||  ||||||| |||| ||  ||||||  ||||||||||||||||||    
T  30844964 tgtccataagatgtgtcattaaatctttacttattgcatttgagtctctaattaaatcaaaattaaaca 30845032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 328 - 380
Target Start/End: Complemental strand, 38250052 - 38250000
Alignment:
Q  328 tgtcattatattgttacttactgcaattatgtctctggttaaatcaaaattaa 380  Q
    |||||||||||  ||||||| ||||||| |||| ||| |||||||||||||||    
T  38250052 tgtcattatatctttacttattgcaattgtgtccctgattaaatcaaaattaa 38250000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 7e-31; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 230 - 318
Target Start/End: Complemental strand, 40640683 - 40640595
Alignment:
Q  230 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaatccatgtc 318  Q
    ||||||||| |||||||||||||| |||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  40640683 aggaaaattctatggtgaagtcatgagaatgacttttctggtgaagttaaatggtcaatcattgagcatttgtgtatttaatccatgtc 40640595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 229 - 316
Target Start/End: Complemental strand, 45879548 - 45879461
Alignment:
Q  229 taggaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaatccatg 316  Q
    |||||||||| |||| ||||||||| |||||||||||||| || |||| |||||| | ||||||||||||||||||||||||||||||    
T  45879548 taggaaaattctatgctgaagtcatgagaatgacttttctggtaaagttaaatggccaatcattgagcatttgtgtatttaatccatg 45879461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 234 - 318
Target Start/End: Complemental strand, 38392673 - 38392589
Alignment:
Q  234 aaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaatccatgtc 318  Q
    ||||| |||||||||||||| |||||||||||| | ||||||| ||||||||  ||||||| |||||||||||||||||||||||    
T  38392673 aaattatatggtgaagtcatgagaatgacttttttggtgaagttaaatggtcagtcattgaacatttgtgtatttaatccatgtc 38392589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 232 - 311
Target Start/End: Complemental strand, 32180794 - 32180715
Alignment:
Q  232 gaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaat 311  Q
    ||||||| || |||||||| || |||||||||||||||||||||| |||||||  |||||||||||||||||||||||||    
T  32180794 gaaaattgtacggtgaagttatgagaatgacttttctagtgaagttaaatggttaatcattgagcatttgtgtatttaat 32180715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 231 - 316
Target Start/End: Complemental strand, 49359676 - 49359591
Alignment:
Q  231 ggaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaatccatg 316  Q
    |||||||| |||||||||||||| | |||||||||| | ||||||| |||||| | |||||||| |||||||||||||||||||||    
T  49359676 ggaaaattctatggtgaagtcatgaaaatgactttttttgtgaagttaaatggccaatcattgaacatttgtgtatttaatccatg 49359591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 231 - 317
Target Start/End: Complemental strand, 47930714 - 47930628
Alignment:
Q  231 ggaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaatccatgt 317  Q
    |||||||| |||||||||||||| | ||||| |||||| ||||||| |||||  | |||||||| ||||||||||||||||||||||    
T  47930714 ggaaaattctatggtgaagtcatgaaaatgatttttctggtgaagttaaatgaccaatcattgaacatttgtgtatttaatccatgt 47930628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 232 - 311
Target Start/End: Complemental strand, 19606961 - 19606882
Alignment:
Q  232 gaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaat 311  Q
    ||||||| ||||||||||| |||| |||||||||||| ||||||| |||||  | || ||||||||||||||||||||||    
T  19606961 gaaaattctatggtgaagttataaaaatgacttttctggtgaagttaaatgaccaatgattgagcatttgtgtatttaat 19606882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 245 - 318
Target Start/End: Complemental strand, 7568753 - 7568680
Alignment:
Q  245 tgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaatccatgtc 318  Q
    ||||||||| | ||| |||||| | ||||||| |||||||  ||||||||||||||||||||||||| ||||||    
T  7568753 tgaagtcatgaaaattacttttttggtgaagttaaatggtaaatcattgagcatttgtgtatttaattcatgtc 7568680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 233 - 318
Target Start/End: Original strand, 44880794 - 44880878
Alignment:
Q  233 aaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaatccatgtc 318  Q
    ||||||||| |||||| | || | |||||||||| || |||||| |||||||| |||||||| ||||| |||||||||||||||||    
T  44880794 aaaattttacggtgaaattatgaaaatgactttt-taatgaagttaaatggtcaatcattgaacatttatgtatttaatccatgtc 44880878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 319 - 383
Target Start/End: Complemental strand, 7568646 - 7568582
Alignment:
Q  319 cataaaatgtgtcattatattgttacttactgcaattatgtctctggttaaatcaaaattaaaca 383  Q
    |||||| |||||||||||||  ||||||| | ||||| |||||||| ||||||||||||||||||    
T  7568646 cataaagtgtgtcattatatctttacttattacaattgtgtctctgattaaatcaaaattaaaca 7568582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 315 - 383
Target Start/End: Original strand, 51878231 - 51878299
Alignment:
Q  315 tgtccataaaatgtgtcattatattgttacttactgcaattatgtctctggttaaatcaaaattaaaca 383  Q
    |||||||||  ||||| |||||||||||||||| ||||||| |||||| | |||||| |||||||||||    
T  51878231 tgtccataatgtgtgttattatattgttacttattgcaattgtgtctccgattaaataaaaattaaaca 51878299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 229 - 266
Target Start/End: Complemental strand, 3655389 - 3655352
Alignment:
Q  229 taggaaaattttatggtgaagtcataagaatgactttt 266  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  3655389 taggaaaattttatggtgaagtcataaaaatgactttt 3655352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 230 - 279
Target Start/End: Original strand, 22450958 - 22451007
Alignment:
Q  230 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaa 279  Q
    ||||||||| |||||||||||||| ||||||| |||||| ||||||||||    
T  22450958 aggaaaattctatggtgaagtcatgagaatgatttttctggtgaagtcaa 22451007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 326 - 383
Target Start/End: Complemental strand, 32180671 - 32180614
Alignment:
Q  326 tgtgtcattatattgttacttactgcaattatgtctctggttaaatcaaaattaaaca 383  Q
    |||||||||||||  ||||||| ||||||| |||| ||| ||||||||||||||||||    
T  32180671 tgtgtcattatatctttacttattgcaattgtgtccctgattaaatcaaaattaaaca 32180614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 326 - 383
Target Start/End: Complemental strand, 38392548 - 38392491
Alignment:
Q  326 tgtgtcattatattgttacttactgcaattatgtctctggttaaatcaaaattaaaca 383  Q
    |||||||||||||  ||||||| ||||||| |||| ||| ||||||||||||||||||    
T  38392548 tgtgtcattatatatttacttattgcaattgtgtccctgattaaatcaaaattaaaca 38392491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 326 - 383
Target Start/End: Complemental strand, 49359548 - 49359491
Alignment:
Q  326 tgtgtcattatattgttacttactgcaattatgtctctggttaaatcaaaattaaaca 383  Q
    |||||||||||||  ||||||| ||||||| |||| ||| ||||||||||||||||||    
T  49359548 tgtgtcattatatctttacttaatgcaattgtgtccctgattaaatcaaaattaaaca 49359491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 229 - 276
Target Start/End: Complemental strand, 7327670 - 7327623
Alignment:
Q  229 taggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 276  Q
    |||||||||| ||||||||||| || |||||||||||| |||||||||    
T  7327670 taggaaaattctatggtgaagttatgagaatgacttttttagtgaagt 7327623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 232 - 267
Target Start/End: Complemental strand, 14586830 - 14586795
Alignment:
Q  232 gaaaattttatggtgaagtcataagaatgacttttc 267  Q
    |||||||||||||||||||||| |||||||||||||    
T  14586830 gaaaattttatggtgaagtcattagaatgacttttc 14586795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 228 - 311
Target Start/End: Complemental strand, 18272274 - 18272192
Alignment:
Q  228 gtaggaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaat 311  Q
    ||||||||||| || ||||||||||| ||||||||||||||| ||| || || |   | |||||||| ||||||||||||||||    
T  18272274 gtaggaaaattatacggtgaagtcatgagaatgacttttctaatgacgttaact-cccaatcattgaacatttgtgtatttaat 18272192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 229 - 276
Target Start/End: Complemental strand, 26941447 - 26941400
Alignment:
Q  229 taggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 276  Q
    |||||||||| |||||||||||||||||||||| |||| | |||||||    
T  26941447 taggaaaattctatggtgaagtcataagaatgatttttttggtgaagt 26941400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 233 - 276
Target Start/End: Complemental strand, 53818555 - 53818512
Alignment:
Q  233 aaaattttatggtgaagtcataagaatgacttttctagtgaagt 276  Q
    ||||||||||||||||||||| ||||||| |||||| |||||||    
T  53818555 aaaattttatggtgaagtcatgagaatgatttttctggtgaagt 53818512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 276
Target Start/End: Original strand, 21193596 - 21193642
Alignment:
Q  230 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 276  Q
    ||||||||| |||||| ||||||| |||||||||||||| |||||||    
T  21193596 aggaaaattctatggtaaagtcatgagaatgacttttctggtgaagt 21193642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 276
Target Start/End: Original strand, 35844316 - 35844362
Alignment:
Q  230 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 276  Q
    ||||||||| |||||||||||||| | |||||||||||| |||||||    
T  35844316 aggaaaattctatggtgaagtcatgataatgacttttctggtgaagt 35844362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 268
Target Start/End: Original strand, 53175713 - 53175751
Alignment:
Q  230 aggaaaattttatggtgaagtcataagaatgacttttct 268  Q
    ||||||||||||||||||||| || ||||||||||||||    
T  53175713 aggaaaattttatggtgaagttatgagaatgacttttct 53175751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 268
Target Start/End: Original strand, 4015451 - 4015488
Alignment:
Q  231 ggaaaattttatggtgaagtcataagaatgacttttct 268  Q
    |||||||| |||||||||||||| ||||||||||||||    
T  4015451 ggaaaattctatggtgaagtcatgagaatgacttttct 4015488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 276
Target Start/End: Complemental strand, 20373481 - 20373436
Alignment:
Q  231 ggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 276  Q
    |||||||||||| |||||||||||||||||| |||| | |||||||    
T  20373481 ggaaaattttatagtgaagtcataagaatgatttttttggtgaagt 20373436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 266
Target Start/End: Complemental strand, 40552446 - 40552409
Alignment:
Q  229 taggaaaattttatggtgaagtcataagaatgactttt 266  Q
    |||||||||| |||||||||||||| ||||||||||||    
T  40552446 taggaaaattctatggtgaagtcatgagaatgactttt 40552409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 266
Target Start/End: Complemental strand, 43976068 - 43976035
Alignment:
Q  233 aaaattttatggtgaagtcataagaatgactttt 266  Q
    ||||||||||||||||||||| ||||||||||||    
T  43976068 aaaattttatggtgaagtcatgagaatgactttt 43976035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 276
Target Start/End: Complemental strand, 51213166 - 51213121
Alignment:
Q  231 ggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 276  Q
    |||||||| |||||||||||||| |||||||||||| | |||||||    
T  51213166 ggaaaattctatggtgaagtcatgagaatgacttttttggtgaagt 51213121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 266
Target Start/End: Complemental strand, 21009991 - 21009955
Alignment:
Q  230 aggaaaattttatggtgaagtcataagaatgactttt 266  Q
    ||||||||||||||||||||| |||||||||| ||||    
T  21009991 aggaaaattttatggtgaagttataagaatgattttt 21009955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 276
Target Start/End: Original strand, 29163839 - 29163883
Alignment:
Q  232 gaaaattttatggtgaagtcataagaatgacttttctagtgaagt 276  Q
    |||||||||||||||||||||| | ||||| |||||| |||||||    
T  29163839 gaaaattttatggtgaagtcattaaaatgatttttctggtgaagt 29163883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 381
Target Start/End: Complemental strand, 40640562 - 40640496
Alignment:
Q  318 ccataaaatgtgtcattatattgttactta---ctgcaattatgtctctggttaaatcaaaattaaa 381  Q
    |||||| ||||||||||||||| |||||||   |||||||| ||||  || ||||||||||||||||    
T  40640562 ccataagatgtgtcattatatttttacttattgctgcaattgtgtccttgattaaatcaaaattaaa 40640496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 327 - 383
Target Start/End: Original strand, 44880919 - 44880975
Alignment:
Q  327 gtgtcattatattgttacttactgcaattatgtctctggttaaatcaaaattaaaca 383  Q
    ||||||||||||  ||||||| | ||||| |||| ||| ||||||||||||||||||    
T  44880919 gtgtcattatatctttacttattacaattgtgtccctgattaaatcaaaattaaaca 44880975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 229 - 318
Target Start/End: Complemental strand, 36055924 - 36055835
Alignment:
Q  229 taggaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaatccatgtc 318  Q
    ||||||||||||||||||| ||||| |||||||||||||| ||||||| |||||||| ||||||||||||||||| ||||||| ||||||    
T  36055924 taggaaaattttatggtgatgtcatgagaatgacttttcttgtgaagttaaatggtcaatcattgagcatttgtgaatttaattcatgtc 36055835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 232 - 311
Target Start/End: Original strand, 10237415 - 10237494
Alignment:
Q  232 gaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaat 311  Q
    ||||||| ||| |||||||||| | |||||||||||||||||||| |||||||| |||||||||||||||||||||||||    
T  10237415 gaaaattctattgtgaagtcatgaaaatgacttttctagtgaagttaaatggtcaatcattgagcatttgtgtatttaat 10237494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 230 - 318
Target Start/End: Original strand, 22616493 - 22616580
Alignment:
Q  230 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaatccatgtc 318  Q
    ||||||||| |||||||||||||| | |||||||||||| ||||||| |||||| | ||||||||||| || |||||||||||||||||    
T  22616493 aggaaaattctatggtgaagtcatgaaaatgacttttctggtgaagttaaatggccaatcattgagca-ttatgtatttaatccatgtc 22616580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 233 - 311
Target Start/End: Complemental strand, 41417625 - 41417547
Alignment:
Q  233 aaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaat 311  Q
    |||||| ||||||||| || ||||||||| |||||||||||||| |||||||  |||||||| ||||||||||||||||    
T  41417625 aaaattatatggtgaaatcgtaagaatgatttttctagtgaagttaaatggttaatcattgaacatttgtgtatttaat 41417547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 229 - 276
Target Start/End: Original strand, 13380493 - 13380540
Alignment:
Q  229 taggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 276  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||    
T  13380493 taggcaaattttatggtgaagtcatgagaatgacttttctagtgaagt 13380540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 232 - 310
Target Start/End: Original strand, 21320752 - 21320830
Alignment:
Q  232 gaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaa 310  Q
    ||||||| ||||||||||| |||| |||||||||| |  |||||| ||||| || ||||||||||||| ||||||||||    
T  21320752 gaaaattctatggtgaagtaataaaaatgacttttttgatgaagttaaatgatcaatcattgagcattcgtgtatttaa 21320830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 229 - 276
Target Start/End: Original strand, 39572817 - 39572864
Alignment:
Q  229 taggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 276  Q
    |||||||||| |||||||||||||| ||||||||||||||||| ||||    
T  39572817 taggaaaattctatggtgaagtcatgagaatgacttttctagttaagt 39572864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 276
Target Start/End: Complemental strand, 8742063 - 8742017
Alignment:
Q  230 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 276  Q
    ||||||||| |||||||||||||| |||||||||||||| |||||||    
T  8742063 aggaaaattctatggtgaagtcatgagaatgacttttctggtgaagt 8742017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 326 - 383
Target Start/End: Original strand, 22616621 - 22616678
Alignment:
Q  326 tgtgtcattatattgttacttactgcaattatgtctctggttaaatcaaaattaaaca 383  Q
    |||||||||||||  ||||||| ||||||| |||| ||| ||||||||||||||||||    
T  22616621 tgtgtcattatatctttacttattgcaattgtgtccctgattaaatcaaaattaaaca 22616678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 279
Target Start/End: Complemental strand, 14409501 - 14409453
Alignment:
Q  231 ggaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaa 279  Q
    |||||||| |||||||||||||| ||||||| |||||| ||||||||||    
T  14409501 ggaaaattctatggtgaagtcatgagaatgatttttctggtgaagtcaa 14409453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 229 - 276
Target Start/End: Original strand, 9200231 - 9200278
Alignment:
Q  229 taggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 276  Q
    ||||||||||||||||||||||||| | ||| |||||||| |||||||    
T  9200231 taggaaaattttatggtgaagtcattaaaataacttttctggtgaagt 9200278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 320 - 383
Target Start/End: Original strand, 21320873 - 21320936
Alignment:
Q  320 ataaaatgtgtcattatattgttacttactgcaattatgtctctggttaaatcaaaattaaaca 383  Q
    |||| |||| |||||||||  ||||||| | ||||| |||||||| ||||||||||||||||||    
T  21320873 ataagatgtatcattatatctttacttattacaattgtgtctctgattaaatcaaaattaaaca 21320936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 276
Target Start/End: Complemental strand, 5112489 - 5112443
Alignment:
Q  230 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 276  Q
    |||||||||||||||||||||||| | |||||||||| | |||||||    
T  5112489 aggaaaattttatggtgaagtcatgaaaatgacttttttggtgaagt 5112443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 276
Target Start/End: Original strand, 19119858 - 19119904
Alignment:
Q  230 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 276  Q
    ||||||||| |||||||||||||| |||||||||||| | |||||||    
T  19119858 aggaaaattctatggtgaagtcatgagaatgacttttgtggtgaagt 19119904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 317 - 383
Target Start/End: Original strand, 33163634 - 33163700
Alignment:
Q  317 tccataaaatgtgtcattatattgttacttactgcaattatgtctctggttaaatcaaaattaaaca 383  Q
    |||||||  |||| ||||||||  ||||||| ||||||| |||| ||| ||||||||||||||||||    
T  33163634 tccataaggtgtgccattatatctttacttattgcaattgtgtccctgattaaatcaaaattaaaca 33163700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 276
Target Start/End: Original strand, 7693230 - 7693275
Alignment:
Q  231 ggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 276  Q
    |||||||| |||||||||||||| | |||||||||||| |||||||    
T  7693230 ggaaaattctatggtgaagtcattaaaatgacttttctggtgaagt 7693275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 326 - 383
Target Start/End: Complemental strand, 12081187 - 12081130
Alignment:
Q  326 tgtgtcattatattgttacttactgcaattatgtctctggttaaatcaaaattaaaca 383  Q
    |||||| ||||||  ||||||| |||||||| ||| ||| ||||||||||||||||||    
T  12081187 tgtgtccttatatctttacttattgcaattaagtccctgattaaatcaaaattaaaca 12081130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 266
Target Start/End: Complemental strand, 12164966 - 12164929
Alignment:
Q  229 taggaaaattttatggtgaagtcataagaatgactttt 266  Q
    ||||||||||||| ||||||||||| ||||||||||||    
T  12164966 taggaaaattttacggtgaagtcatgagaatgactttt 12164929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 318 - 383
Target Start/End: Original strand, 13380619 - 13380684
Alignment:
Q  318 ccataaaatgtgtcattatattgttacttactgcaattatgtctctggttaaatcaaaattaaaca 383  Q
    ||||||||| |||||||||||  ||| ||| ||||||| | || ||| ||||||||||||||||||    
T  13380619 ccataaaatatgtcattatatctttatttattgcaattgtatccctgattaaatcaaaattaaaca 13380684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 326 - 383
Target Start/End: Original strand, 25653712 - 25653769
Alignment:
Q  326 tgtgtcattatattgttacttactgcaattatgtctctggttaaatcaaaattaaaca 383  Q
    |||||||||||||  ||||||| ||||| ||| || ||| ||||||||||||||||||    
T  25653712 tgtgtcattatatctttacttattgcaactatttccctgattaaatcaaaattaaaca 25653769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 331 - 383
Target Start/End: Original strand, 13887374 - 13887426
Alignment:
Q  331 cattatattgttacttactgcaattatgtctctggttaaatcaaaattaaaca 383  Q
    ||||||||| ||||||| ||||||| ||||  || ||||||||||||||||||    
T  13887374 cattatatttttacttattgcaattgtgtccttgattaaatcaaaattaaaca 13887426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 276
Target Start/End: Original strand, 22980794 - 22980838
Alignment:
Q  232 gaaaattttatggtgaagtcataagaatgacttttctagtgaagt 276  Q
    |||||||||||| |||||| || |||||||||||||| |||||||    
T  22980794 gaaaattttatgatgaagttatgagaatgacttttctggtgaagt 22980838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 266
Target Start/End: Original strand, 24886101 - 24886137
Alignment:
Q  230 aggaaaattttatggtgaagtcataagaatgactttt 266  Q
    ||||||||||||||||||| |||| ||||||||||||    
T  24886101 aggaaaattttatggtgaaatcatgagaatgactttt 24886137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 318
Target Start/End: Original strand, 31878422 - 31878470
Alignment:
Q  270 gtgaagtcaaatggtcgatcattgagcatttgtgtatttaatccatgtc 318  Q
    ||||||| |||| ||| |||||| |||||||||||||||||| ||||||    
T  31878422 gtgaagttaaattgtcaatcattaagcatttgtgtatttaattcatgtc 31878470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 4e-26; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 230 - 318
Target Start/End: Original strand, 19631748 - 19631836
Alignment:
Q  230 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaatccatgtc 318  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||||| |||||  | |||||||| |||||||||||||||||||||||    
T  19631748 aggaaaattctatggtgaagtcataagaatgacttttctggtgaagttaaatgaccaatcattgaacatttgtgtatttaatccatgtc 19631836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 317 - 383
Target Start/End: Complemental strand, 26301854 - 26301788
Alignment:
Q  317 tccataaaatgtgtcattatattgttacttactgcaattatgtctctggttaaatcaaaattaaaca 383  Q
    ||||||| ||||||||||||||  ||||||| ||||||| |||| ||| ||||||||||||||||||    
T  26301854 tccataagatgtgtcattatatctttacttattgcaattgtgtccctgattaaatcaaaattaaaca 26301788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 228 - 318
Target Start/End: Original strand, 30338473 - 30338563
Alignment:
Q  228 gtaggaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaatccatgtc 318  Q
    |||| |||||| |||| ||||||  | |||||||||||| ||||||||| ||||| |  |||||||||||||| || ||||||||||||||    
T  30338473 gtagaaaaattctatgatgaagttgtgagaatgacttttttagtgaagttaaatgattaatcattgagcatttatgcatttaatccatgtc 30338563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 326 - 383
Target Start/End: Complemental strand, 11084074 - 11084017
Alignment:
Q  326 tgtgtcattatattgttacttactgcaattatgtctctggttaaatcaaaattaaaca 383  Q
    |||||||||||||  ||||||| ||||||| |||||||| ||||||||||||||||||    
T  11084074 tgtgtcattatatctttacttattgcaattgtgtctctgattaaatcaaaattaaaca 11084017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 230 - 318
Target Start/End: Complemental strand, 11084201 - 11084113
Alignment:
Q  230 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaatccatgtc 318  Q
    ||||||||| |||||||||||||| | ||| |||||||| || |||| |||||  | ||||||||  |||| |||||||||||||||||    
T  11084201 aggaaaattctatggtgaagtcatgaaaataacttttctggtaaagttaaatgaccaatcattgaatatttatgtatttaatccatgtc 11084113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 230 - 318
Target Start/End: Complemental strand, 26301972 - 26301884
Alignment:
Q  230 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaatccatgtc 318  Q
    ||||||||| |||||||||||||||| ||||| |||| | ||||||| |||||  | ||||||||  |||| |||||||||| ||||||    
T  26301972 aggaaaattatatggtgaagtcataaaaatgatttttttcgtgaagttaaatgaccaatcattgaatatttatgtatttaattcatgtc 26301884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 229 - 276
Target Start/End: Complemental strand, 7055401 - 7055354
Alignment:
Q  229 taggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 276  Q
    ||||||||||||||||||||||||||||||||| |||| | |||||||    
T  7055401 taggaaaattttatggtgaagtcataagaatgatttttttggtgaagt 7055354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 232 - 279
Target Start/End: Original strand, 20768087 - 20768134
Alignment:
Q  232 gaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaa 279  Q
    ||||||| |||||||||||||| |||||||||||||| ||||||||||    
T  20768087 gaaaattctatggtgaagtcatgagaatgacttttctggtgaagtcaa 20768134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 276
Target Start/End: Original strand, 8513232 - 8513278
Alignment:
Q  230 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 276  Q
    ||||||||| |||||||||||||| |||||||||||||| |||||||    
T  8513232 aggaaaattctatggtgaagtcatgagaatgacttttctggtgaagt 8513278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 276
Target Start/End: Complemental strand, 3880126 - 3880078
Alignment:
Q  228 gtaggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 276  Q
    ||||||||||| |||||||||||||  |||||||||||||| |||||||    
T  3880126 gtaggaaaattctatggtgaagtcacgagaatgacttttctggtgaagt 3880078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 281
Target Start/End: Complemental strand, 6614082 - 6614034
Alignment:
Q  233 aaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaat 281  Q
    |||||| ||||||||| ||||||||||||||||||| ||||||| ||||    
T  6614082 aaaattatatggtgaaatcataagaatgacttttctggtgaagttaaat 6614034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 233 - 276
Target Start/End: Complemental strand, 30353540 - 30353497
Alignment:
Q  233 aaaattttatggtgaagtcataagaatgacttttctagtgaagt 276  Q
    |||||| |||||||||||||| |||||||||||||| |||||||    
T  30353540 aaaattctatggtgaagtcatgagaatgacttttctggtgaagt 30353497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 276
Target Start/End: Complemental strand, 4319008 - 4318962
Alignment:
Q  230 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 276  Q
    ||||||||| |||||||||||||| |||||||||||| | |||||||    
T  4319008 aggaaaattctatggtgaagtcatgagaatgacttttttggtgaagt 4318962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 276
Target Start/End: Original strand, 5627390 - 5627436
Alignment:
Q  230 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 276  Q
    ||||||||| || |||||||||||||||||||||||| | |||||||    
T  5627390 aggaaaattctaaggtgaagtcataagaatgacttttttggtgaagt 5627436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 276
Target Start/End: Complemental strand, 24662238 - 24662193
Alignment:
Q  231 ggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 276  Q
    |||||||| |||||| ||||||| | ||||||||||||||||||||    
T  24662238 ggaaaattctatggtaaagtcatgataatgacttttctagtgaagt 24662193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 266
Target Start/End: Original strand, 1945832 - 1945868
Alignment:
Q  230 aggaaaattttatggtgaagtcataagaatgactttt 266  Q
    ||||||||| || ||||||||||||||||||||||||    
T  1945832 aggaaaattctacggtgaagtcataagaatgactttt 1945868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 279
Target Start/End: Complemental strand, 7235218 - 7235170
Alignment:
Q  231 ggaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaa 279  Q
    |||||||| ||||||||||| || |||||||||||||  ||||||||||    
T  7235218 ggaaaattctatggtgaagttatgagaatgacttttccggtgaagtcaa 7235170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 233 - 316
Target Start/End: Complemental strand, 2266902 - 2266819
Alignment:
Q  233 aaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaatccatg 316  Q
    |||||| |||||||||||||| | |||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||    
T  2266902 aaaattatatggtgaagtcatgataatgacttttctagtgaagttaaatcgtcaatcattgagcatttgtgtatttaatccatg 2266819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 230 - 311
Target Start/End: Original strand, 2704511 - 2704592
Alignment:
Q  230 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaat 311  Q
    |||||||||||||||||||||||| | |||||||||||| ||||||| ||||| || ||||||||  |||||||||||||||    
T  2704511 aggaaaattttatggtgaagtcatgaaaatgacttttctggtgaagttaaatgatcaatcattgaatatttgtgtatttaat 2704592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 234 - 307
Target Start/End: Original strand, 17612338 - 17612411
Alignment:
Q  234 aaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatt 307  Q
    ||||| |||||||||||||| ||||||| |||| || |||||| |||||||| |||||| ||||||||||||||    
T  17612338 aaattctatggtgaagtcatgagaatgatttttttaatgaagttaaatggtcaatcattaagcatttgtgtatt 17612411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 232 - 318
Target Start/End: Original strand, 51204580 - 51204670
Alignment:
Q  232 gaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaa----atggtcgatcattgagcatttgtgtatttaatccatgtc 318  Q
    ||||||| |||||||||||||||| |||||||||||| ||||||| ||    ||| || || ||||||| |||||||||||||||||||||    
T  51204580 gaaaattctatggtgaagtcataaaaatgacttttctggtgaagttaaccctatgatcaattattgagcttttgtgtatttaatccatgtc 51204670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 231 - 276
Target Start/End: Complemental strand, 55241315 - 55241270
Alignment:
Q  231 ggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 276  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||    
T  55241315 ggaaaattctatggtgaagtcatgagaatgacttttctagtgaagt 55241270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 232 - 276
Target Start/End: Original strand, 4597994 - 4598038
Alignment:
Q  232 gaaaattttatggtgaagtcataagaatgacttttctagtgaagt 276  Q
    |||||||||||||||||||||| |||||||||||||| |||||||    
T  4597994 gaaaattttatggtgaagtcattagaatgacttttctggtgaagt 4598038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 231 - 279
Target Start/End: Complemental strand, 28003197 - 28003149
Alignment:
Q  231 ggaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaa 279  Q
    |||||||| |||||||||||||| |||||||||||||| ||||||||||    
T  28003197 ggaaaattctatggtgaagtcatgagaatgacttttctggtgaagtcaa 28003149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 230 - 318
Target Start/End: Complemental strand, 54995848 - 54995760
Alignment:
Q  230 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaatccatgtc 318  Q
    ||||||||| || | ||||||||| | |||||||||| | ||||||| |||||| | |||||||  |||||| ||||||||||||||||    
T  54995848 aggaaaattctacgatgaagtcatgataatgacttttttggtgaagttaaatggccaatcattgtacatttgcgtatttaatccatgtc 54995760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 316
Target Start/End: Complemental strand, 20097537 - 20097450
Alignment:
Q  233 aaaattttatggtgaagtcataagaatgacttttctagtgaagtcaa----atggtcgatcattgagcatttgtgtatttaatccatg 316  Q
    |||||| |||||||||||||| |||||||||||||| ||||||| ||    ||| || ||||||  ||||||||||||||||| ||||    
T  20097537 aaaattctatggtgaagtcatgagaatgacttttctggtgaagttaaccctatgatcaatcattccgcatttgtgtatttaattcatg 20097450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 276
Target Start/End: Complemental strand, 32912792 - 32912746
Alignment:
Q  230 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 276  Q
    ||||||||| ||||||||||||||||||||||||||| | |||||||    
T  32912792 aggaaaattctatggtgaagtcataagaatgacttttttggtgaagt 32912746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 276
Target Start/End: Complemental strand, 34361703 - 34361657
Alignment:
Q  230 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 276  Q
    ||||||||| ||||||||||||||||||||||||||| | |||||||    
T  34361703 aggaaaattctatggtgaagtcataagaatgacttttttggtgaagt 34361657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 266
Target Start/End: Complemental strand, 37663953 - 37663915
Alignment:
Q  228 gtaggaaaattttatggtgaagtcataagaatgactttt 266  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  37663953 gtaggaaaattctatggtgaagtcataagaatgactttt 37663915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 276
Target Start/End: Complemental strand, 38812309 - 38812263
Alignment:
Q  230 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 276  Q
    ||||||||| |||||||||||||| |||||||||||||| |||||||    
T  38812309 aggaaaattctatggtgaagtcatgagaatgacttttctggtgaagt 38812263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 230 - 279
Target Start/End: Original strand, 32579443 - 32579492
Alignment:
Q  230 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaa 279  Q
    |||||||||||||||||||||  | |||||||||||||| ||||||||||    
T  32579443 aggaaaattttatggtgaagttctgagaatgacttttctggtgaagtcaa 32579492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 230 - 279
Target Start/End: Original strand, 38011853 - 38011902
Alignment:
Q  230 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaa 279  Q
    ||||||||| ||||||||| |||| |||||||||||||| ||||||||||    
T  38011853 aggaaaattctatggtgaaatcatgagaatgacttttctggtgaagtcaa 38011902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 233 - 276
Target Start/End: Original strand, 27396618 - 27396661
Alignment:
Q  233 aaaattttatggtgaagtcataagaatgacttttctagtgaagt 276  Q
    |||||| |||||||||||||| |||||||||||||| |||||||    
T  27396618 aaaattctatggtgaagtcatgagaatgacttttctggtgaagt 27396661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 328 - 383
Target Start/End: Complemental strand, 33036120 - 33036065
Alignment:
Q  328 tgtcattatattgttacttactgcaattatgtctctggttaaatcaaaattaaaca 383  Q
    |||||||||||  ||||||| |||||||  ||||||| ||||||||||||||||||    
T  33036120 tgtcattatatctttacttattgcaattgagtctctgattaaatcaaaattaaaca 33036065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 233 - 268
Target Start/End: Complemental strand, 34948306 - 34948271
Alignment:
Q  233 aaaattttatggtgaagtcataagaatgacttttct 268  Q
    ||||||||||||||||||||| ||||||||||||||    
T  34948306 aaaattttatggtgaagtcatgagaatgacttttct 34948271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 233 - 276
Target Start/End: Original strand, 52516599 - 52516642
Alignment:
Q  233 aaaattttatggtgaagtcataagaatgacttttctagtgaagt 276  Q
    ||||||||||||||||||||| |||||||||||| | |||||||    
T  52516599 aaaattttatggtgaagtcatgagaatgacttttatggtgaagt 52516642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 276
Target Start/End: Original strand, 4396325 - 4396371
Alignment:
Q  230 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 276  Q
    ||||||||| ||| |||||||||||| |||||||||| |||||||||    
T  4396325 aggaaaattctatagtgaagtcataaaaatgacttttttagtgaagt 4396371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 276
Target Start/End: Complemental strand, 35021247 - 35021201
Alignment:
Q  230 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 276  Q
    ||||||||| |||||||||||||| | |||||||||||| |||||||    
T  35021247 aggaaaattctatggtgaagtcatgaaaatgacttttctggtgaagt 35021201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 315 - 381
Target Start/End: Complemental strand, 54995730 - 54995664
Alignment:
Q  315 tgtccataaaatgtgtcattatattgttacttactgcaattatgtctctggttaaatcaaaattaaa 381  Q
    |||||||||  |||||| ||||||  ||||||| ||||||| |||| ||| ||||||||||||||||    
T  54995730 tgtccataatgtgtgtctttatatctttacttattgcaattgtgtccctgattaaatcaaaattaaa 54995664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 326 - 383
Target Start/End: Complemental strand, 2266776 - 2266719
Alignment:
Q  326 tgtgtcattatattgttacttactgcaattatgtctctggttaaatcaaaattaaaca 383  Q
    |||||||||||||  ||||||| ||||| |||| || || ||||||||||||||||||    
T  2266776 tgtgtcattatatctttacttattgcaactatgactttgattaaatcaaaattaaaca 2266719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 326 - 383
Target Start/End: Original strand, 2708001 - 2708058
Alignment:
Q  326 tgtgtcattatattgttacttactgcaattatgtctctggttaaatcaaaattaaaca 383  Q
    |||||||||||||  ||||||| |||||||  ||| ||| ||||||||||||||||||    
T  2708001 tgtgtcattatatctttacttattgcaattgagtccctgattaaatcaaaattaaaca 2708058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 302
Target Start/End: Original strand, 33255501 - 33255570
Alignment:
Q  233 aaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgt 302  Q
    |||||| |||||||||||||  ||||| |||||| | ||||||| |||||| | || |||||||||||||    
T  33255501 aaaattatatggtgaagtcacgagaatcacttttttggtgaagttaaatggccaattattgagcatttgt 33255570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 276
Target Start/End: Original strand, 38811813 - 38811858
Alignment:
Q  231 ggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 276  Q
    |||||||| |||||||||||||| ||||||| |||||| |||||||    
T  38811813 ggaaaattctatggtgaagtcatgagaatgatttttctggtgaagt 38811858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 276
Target Start/End: Original strand, 39397918 - 39397963
Alignment:
Q  231 ggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 276  Q
    |||||||| |||||||||||||| |||||||||||| | |||||||    
T  39397918 ggaaaattctatggtgaagtcattagaatgacttttatggtgaagt 39397963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 317
Target Start/End: Original strand, 9743590 - 9743674
Alignment:
Q  233 aaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaatccatgt 317  Q
    |||||| |||||| |||||||   |||||||||| | ||||| | |||||  | || ||||| ||||||||||||||||||||||    
T  9743590 aaaattctatggtaaagtcatgtaaatgacttttttggtgaaattaaatgaccaattattgaacatttgtgtatttaatccatgt 9743674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 266
Target Start/End: Complemental strand, 25701269 - 25701233
Alignment:
Q  230 aggaaaattttatggtgaagtcataagaatgactttt 266  Q
    |||||||||||||||||||||||| | ||||||||||    
T  25701269 aggaaaattttatggtgaagtcatgataatgactttt 25701233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 231 - 318
Target Start/End: Complemental strand, 23402419 - 23402332
Alignment:
Q  231 ggaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaatccatgtc 318  Q
    |||||||| ||||| |||||||| |||||||||||||| ||||||| |||||||| |||||||| ||| |||||||||||| ||||||    
T  23402419 ggaaaattctatggcgaagtcatgagaatgacttttctggtgaagttaaatggtcaatcattgaacatctgtgtatttaattcatgtc 23402332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 240 - 318
Target Start/End: Complemental strand, 22955351 - 22955273
Alignment:
Q  240 tatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaatccatgtc 318  Q
    ||||||||||| || |||||||||||||| ||||||| |||||||| || ||||| |||||||||||||||||||||||    
T  22955351 tatggtgaagtaatgagaatgacttttctggtgaagttaaatggtcaattattgaacatttgtgtatttaatccatgtc 22955273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 247 - 318
Target Start/End: Complemental strand, 37854326 - 37854255
Alignment:
Q  247 aagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaatccatgtc 318  Q
    ||||||| |||||||||||||| ||||| | |||||||| || |||||||||||||||||||||||||||||    
T  37854326 aagtcatgagaatgacttttctggtgaaattaaatggtcaattattgagcatttgtgtatttaatccatgtc 37854255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 231 - 318
Target Start/End: Original strand, 4902340 - 4902427
Alignment:
Q  231 ggaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaatccatgtc 318  Q
    ||||||||||||||||||||||| | ||| | |||| | ||||| | ||||| || || ||||||||||| |||||||||||||||||    
T  4902340 ggaaaattttatggtgaagtcatgaaaataatttttttggtgaatttaaatgatcaattattgagcatttatgtatttaatccatgtc 4902427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 232 - 279
Target Start/End: Complemental strand, 48928748 - 48928701
Alignment:
Q  232 gaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaa 279  Q
    |||||||||||||||||||||| |||||||||||||| ||||||||||    
T  48928748 gaaaattttatggtgaagtcatgagaatgacttttctggtgaagtcaa 48928701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 231 - 276
Target Start/End: Complemental strand, 5657667 - 5657622
Alignment:
Q  231 ggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 276  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||    
T  5657667 ggaaaattctatggtgaagtcatgagaatgacttttctagtgaagt 5657622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 231 - 276
Target Start/End: Original strand, 6546494 - 6546539
Alignment:
Q  231 ggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 276  Q
    |||||||| |||||||||||||||||||||| ||||||||||||||    
T  6546494 ggaaaattctatggtgaagtcataagaatgatttttctagtgaagt 6546539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 245 - 318
Target Start/End: Original strand, 7742933 - 7743006
Alignment:
Q  245 tgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaatccatgtc 318  Q
    ||||||||||| |||||||||| |  |||||| ||||| || ||||||||| |||||||||||||||| |||||    
T  7742933 tgaagtcataaaaatgacttttttgatgaagtaaaatgatcaatcattgagtatttgtgtatttaatctatgtc 7743006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 233 - 276
Target Start/End: Complemental strand, 25691729 - 25691686
Alignment:
Q  233 aaaattttatggtgaagtcataagaatgacttttctagtgaagt 276  Q
    ||||||||||||||||||||| |||||||||||||| |||||||    
T  25691729 aaaattttatggtgaagtcatgagaatgacttttctcgtgaagt 25691686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 318 - 383
Target Start/End: Original strand, 5781636 - 5781701
Alignment:
Q  318 ccataaaatgtgtcattatattgttacttactgcaattatgtctctggttaaatcaaaattaaaca 383  Q
    |||||||||||||||||||||  ||| ||| ||||||| ||||  || ||||||||||||||||||    
T  5781636 ccataaaatgtgtcattatatctttatttattgcaattgtgtccttgattaaatcaaaattaaaca 5781701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 276
Target Start/End: Original strand, 24211717 - 24211761
Alignment:
Q  232 gaaaattttatggtgaagtcataagaatgacttttctagtgaagt 276  Q
    ||||||| ||||||||||||||||||||||||||| | |||||||    
T  24211717 gaaaattctatggtgaagtcataagaatgacttttttggtgaagt 24211761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 266
Target Start/End: Original strand, 30055500 - 30055536
Alignment:
Q  230 aggaaaattttatggtgaagtcataagaatgactttt 266  Q
    ||||||||| |||||||||||||||||||||||||||    
T  30055500 aggaaaattctatggtgaagtcataagaatgactttt 30055536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 327 - 383
Target Start/End: Original strand, 49002353 - 49002409
Alignment:
Q  327 gtgtcattatattgttacttactgcaattatgtctctggttaaatcaaaattaaaca 383  Q
    ||||||||||||  ||||||| ||||||| ||| |||| ||||||||||||||||||    
T  49002353 gtgtcattatatctttacttattgcaattgtgtgtctgattaaatcaaaattaaaca 49002409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 231 - 311
Target Start/End: Complemental strand, 8133609 - 8133527
Alignment:
Q  231 ggaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaa--tggtcgatcattgagcatttgtgtatttaat 311  Q
    |||||||| ||  |||||||||||||||| |||||| | ||||||| |||  || || |||||| ||||||||||||||||||    
T  8133609 ggaaaattctactgtgaagtcataagaataacttttttggtgaagttaaaaatgatcaatcattaagcatttgtgtatttaat 8133527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 230 - 273
Target Start/End: Complemental strand, 26524514 - 26524471
Alignment:
Q  230 aggaaaattttatggtgaagtcataagaatgacttttctagtga 273  Q
    ||||||||| |||||||||||||| |||||||||||||| ||||    
T  26524514 aggaaaattctatggtgaagtcatgagaatgacttttctggtga 26524471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 276
Target Start/End: Complemental strand, 17842773 - 17842727
Alignment:
Q  230 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 276  Q
    ||||||||| |||||||||||||||| |||||||||| | |||||||    
T  17842773 aggaaaattctatggtgaagtcataaaaatgacttttttggtgaagt 17842727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 276
Target Start/End: Original strand, 18797303 - 18797349
Alignment:
Q  230 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 276  Q
    ||||||||| |||||||||||||| |||||||||||| | |||||||    
T  18797303 aggaaaattctatggtgaagtcatgagaatgacttttttggtgaagt 18797349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 268
Target Start/End: Original strand, 8861260 - 8861297
Alignment:
Q  231 ggaaaattttatggtgaagtcataagaatgacttttct 268  Q
    |||||||| |||||||||||||| ||||||||||||||    
T  8861260 ggaaaattctatggtgaagtcatgagaatgacttttct 8861297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 276
Target Start/End: Original strand, 37109847 - 37109892
Alignment:
Q  231 ggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 276  Q
    |||||||| |||||||||||||||| |||||||||| | |||||||    
T  37109847 ggaaaattctatggtgaagtcataaaaatgacttttttggtgaagt 37109892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 307
Target Start/End: Original strand, 40381939 - 40382016
Alignment:
Q  230 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatt 307  Q
    ||||||||| || |||||||| || |||||||||||||| ||||||| ||||| |  |||||| || |||| ||||||    
T  40381939 aggaaaattctacggtgaagttatgagaatgacttttctggtgaagttaaatgattaatcattaagtatttatgtatt 40382016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 262
Target Start/End: Complemental strand, 9356013 - 9355981
Alignment:
Q  230 aggaaaattttatggtgaagtcataagaatgac 262  Q
    |||||||||||||||||||||||| ||||||||    
T  9356013 aggaaaattttatggtgaagtcatgagaatgac 9355981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 228 - 318
Target Start/End: Complemental strand, 24868 - 24778
Alignment:
Q  228 gtaggaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaatccatgtc 318  Q
    ||||||||||| |||||  |||| || ||||||| |||||| ||||| | |||||||| ||||||||||||||||||||||||| ||||||    
T  24868 gtaggaaaattctatggcaaagttatgagaatgatttttctggtgaaattaaatggtcaatcattgagcatttgtgtatttaattcatgtc 24778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 247 - 316
Target Start/End: Original strand, 16127536 - 16127605
Alignment:
Q  247 aagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaatccatg 316  Q
    ||||||| | |||||||||||| ||||||| |||||||| |||||||| |||||||||||||||||||||    
T  16127536 aagtcatgaaaatgacttttctggtgaagttaaatggtcaatcattgatcatttgtgtatttaatccatg 16127605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 228 - 312
Target Start/End: Complemental strand, 13876970 - 13876886
Alignment:
Q  228 gtaggaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaatc 312  Q
    ||||||||||| ||||||||||| || | |||||||||| | ||||||| ||||| || ||||||||| ||||||||||||||||    
T  13876970 gtaggaaaattctatggtgaagttatgaaaatgacttttatggtgaagttaaatgatcaatcattgagtatttgtgtatttaatc 13876886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 229 - 316
Target Start/End: Original strand, 16132473 - 16132560
Alignment:
Q  229 taggaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaatccatg 316  Q
    |||||||||| |||||||||||||  ||| |||||||| | ||||||| ||||||   || |||||||||||||||||||||||||||    
T  16132473 taggaaaattctatggtgaagtcaatagattgacttttttggtgaagttaaatggcaaattattgagcatttgtgtatttaatccatg 16132560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 230 - 276
Target Start/End: Original strand, 32267029 - 32267075
Alignment:
Q  230 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 276  Q
    ||||||||||||||||||||||||||||||||||||| | |||||||    
T  32267029 aggaaaattttatggtgaagtcataagaatgactttttttgtgaagt 32267075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 231 - 281
Target Start/End: Original strand, 43579242 - 43579292
Alignment:
Q  231 ggaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaat 281  Q
    |||||||| |||||||||||||| |||||||||||||||||||||| ||||    
T  43579242 ggaaaattctatggtgaagtcatgagaatgacttttctagtgaagttaaat 43579292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 326 - 383
Target Start/End: Original strand, 16132603 - 16132660
Alignment:
Q  326 tgtgtcattatattgttacttactgcaattatgtctctggttaaatcaaaattaaaca 383  Q
    |||||||||||||  ||||||| ||||||| |||||||| ||||||||||||||||||    
T  16132603 tgtgtcattatatctttacttattgcaattgtgtctctgattaaatcaaaattaaaca 16132660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 268 - 316
Target Start/End: Complemental strand, 10758311 - 10758263
Alignment:
Q  268 tagtgaagtcaaatggtcgatcattgagcatttgtgtatttaatccatg 316  Q
    ||||||||| |||||||| ||||||||||||||||||||||||| ||||    
T  10758311 tagtgaagttaaatggtcaatcattgagcatttgtgtatttaattcatg 10758263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 231 - 279
Target Start/End: Complemental strand, 31621733 - 31621685
Alignment:
Q  231 ggaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaa 279  Q
    |||||||| || ||||||||||| |||||||||||||||||||||||||    
T  31621733 ggaaaattctacggtgaagtcatgagaatgacttttctagtgaagtcaa 31621685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 232 - 279
Target Start/End: Original strand, 14758038 - 14758085
Alignment:
Q  232 gaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaa 279  Q
    |||||||||| ||||||||||| |||||||||||||| ||||||||||    
T  14758038 gaaaattttacggtgaagtcatgagaatgacttttctggtgaagtcaa 14758085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 276
Target Start/End: Original strand, 1547282 - 1547328
Alignment:
Q  230 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 276  Q
    ||||||||| |||||||||||||| |||||||||||||| |||||||    
T  1547282 aggaaaattctatggtgaagtcatgagaatgacttttctggtgaagt 1547328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 326 - 383
Target Start/End: Complemental strand, 10758220 - 10758163
Alignment:
Q  326 tgtgtcattatattgttacttactgcaattatgtctctggttaaatcaaaattaaaca 383  Q
    |||||||||||||| ||||||| ||||||| |||| ||  ||||||||||||||||||    
T  10758220 tgtgtcattatatttttacttattgcaattgtgtccctaattaaatcaaaattaaaca 10758163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 231 - 276
Target Start/End: Original strand, 23999343 - 23999388
Alignment:
Q  231 ggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 276  Q
    ||||||||||||||||||||||||||||||| |||| | |||||||    
T  23999343 ggaaaattttatggtgaagtcataagaatgatttttttggtgaagt 23999388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 326 - 383
Target Start/End: Original strand, 27118458 - 27118515
Alignment:
Q  326 tgtgtcattatattgttacttactgcaattatgtctctggttaaatcaaaattaaaca 383  Q
    |||||||||||||  ||||||| ||||||| |||| ||| ||||||||||||||||||    
T  27118458 tgtgtcattatatctttacttattgcaattgtgtccctgattaaatcaaaattaaaca 27118515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 278
Target Start/End: Complemental strand, 4150536 - 4150488
Alignment:
Q  230 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagtca 278  Q
    ||||||||| |||||||||||||| | |||||||||||| |||||||||    
T  4150536 aggaaaattctatggtgaagtcatgataatgacttttctggtgaagtca 4150488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 229 - 276
Target Start/End: Original strand, 18422645 - 18422692
Alignment:
Q  229 taggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 276  Q
    |||||||||| |||||||||||||||| |||||||||| | |||||||    
T  18422645 taggaaaattctatggtgaagtcataaaaatgacttttttggtgaagt 18422692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 276
Target Start/End: Complemental strand, 11742531 - 11742485
Alignment:
Q  230 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 276  Q
    ||||||||||||| ||||||| || |||||||||||||| |||||||    
T  11742531 aggaaaattttatcgtgaagttatgagaatgacttttctggtgaagt 11742485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 276
Target Start/End: Original strand, 16415640 - 16415686
Alignment:
Q  230 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 276  Q
    ||||||||| || ||||||||||| |||||||||||||| |||||||    
T  16415640 aggaaaattctaaggtgaagtcatgagaatgacttttctggtgaagt 16415686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 279
Target Start/End: Complemental strand, 33725778 - 33725732
Alignment:
Q  233 aaaattttatggtgaagtcataagaatgacttttctagtgaagtcaa 279  Q
    |||||| |||||| ||||||  |||||||||||||||||||||||||    
T  33725778 aaaattctatggtaaagtcaagagaatgacttttctagtgaagtcaa 33725732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 276
Target Start/End: Complemental strand, 37619077 - 37619031
Alignment:
Q  230 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 276  Q
    ||||||||| ||||||||||| ||||||||||||||| | |||||||    
T  37619077 aggaaaattctatggtgaagttataagaatgacttttttggtgaagt 37619031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 318 - 383
Target Start/End: Complemental strand, 13876847 - 13876782
Alignment:
Q  318 ccataaaatgtgtcattatattgttacttactgcaattatgtctctggttaaatcaaaattaaaca 383  Q
    ||||||| |||||||||||||| ||| ||| ||||||| | ||  || ||||||||||||||||||    
T  13876847 ccataaagtgtgtcattatatttttagttattgcaattgtatccttgattaaatcaaaattaaaca 13876782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 316
Target Start/End: Original strand, 27118330 - 27118415
Alignment:
Q  231 ggaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaatccatg 316  Q
    ||||||||||||| | ||||||| | |||||||||| |  | |||| |||| ||  ||||| |||||||| |||||||||||||||    
T  27118330 ggaaaattttatgataaagtcatgaaaatgacttttttgataaagttaaatagttaatcatggagcatttatgtatttaatccatg 27118415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 266
Target Start/End: Original strand, 30254418 - 30254455
Alignment:
Q  229 taggaaaattttatggtgaagtcataagaatgactttt 266  Q
    |||||||||| ||||||||||| |||||||||||||||    
T  30254418 taggaaaattctatggtgaagttataagaatgactttt 30254455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 266
Target Start/End: Original strand, 30254852 - 30254889
Alignment:
Q  229 taggaaaattttatggtgaagtcataagaatgactttt 266  Q
    |||||||||| |||||||||||||||| ||||||||||    
T  30254852 taggaaaattctatggtgaagtcataataatgactttt 30254889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 268
Target Start/End: Original strand, 38823210 - 38823247
Alignment:
Q  231 ggaaaattttatggtgaagtcataagaatgacttttct 268  Q
    |||||||| |||||||||||||| ||||||||||||||    
T  38823210 ggaaaattctatggtgaagtcatgagaatgacttttct 38823247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 276
Target Start/End: Complemental strand, 47682673 - 47682628
Alignment:
Q  231 ggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 276  Q
    ||||||||||||||||||||||| ||| |||||||| | |||||||    
T  47682673 ggaaaattttatggtgaagtcatgagagtgacttttttggtgaagt 47682628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 315 - 383
Target Start/End: Original strand, 15964217 - 15964285
Alignment:
Q  315 tgtccataaaatgtgtcattatattgttacttactgcaattatgtctctggttaaatcaaaattaaaca 383  Q
    ||||||||| ||||||||||||||  ||||| |   ||||| |||| ||| ||||||||||||||||||    
T  15964217 tgtccataagatgtgtcattatatacttactgatatcaattgtgtccctgattaaatcaaaattaaaca 15964285  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 230 - 311
Target Start/End: Complemental strand, 4108961 - 4108880
Alignment:
Q  230 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaat 311  Q
    |||||||||||||||||||||||| | |||||||||| | || |||| |||||  | ||||||||  |||||||||||||||    
T  4108961 aggaaaattttatggtgaagtcatgaaaatgacttttttggtaaagttaaatgaccaatcattgaatatttgtgtatttaat 4108880  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 229 - 276
Target Start/End: Complemental strand, 1150298 - 1150251
Alignment:
Q  229 taggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 276  Q
    |||||||||| ||||||||||||||||||||||||||| | |||||||    
T  1150298 taggaaaattctatggtgaagtcataagaatgacttttttggtgaagt 1150251  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 315 - 382
Target Start/End: Original strand, 3038523 - 3038590
Alignment:
Q  315 tgtccataaaatgtgtcattatattgttacttactgcaattatgtctctggttaaatcaaaattaaac 382  Q
    |||||||||  |||||||||||||  ||||||| ||||||| |||| ||| |||||||||||||||||    
T  3038523 tgtccataaggtgtgtcattatatctttacttattgcaattgtgtccctgattaaatcaaaattaaac 3038590  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 276
Target Start/End: Original strand, 1204925 - 1204971
Alignment:
Q  230 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 276  Q
    |||||||||||| ||||||||||| |||||||||||||| |||||||    
T  1204925 aggaaaattttacggtgaagtcatgagaatgacttttctggtgaagt 1204971  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 278
Target Start/End: Original strand, 3858849 - 3858895
Alignment:
Q  232 gaaaattttatggtgaagtcataagaatgacttttctagtgaagtca 278  Q
    ||||||||||||||||| | ||| |||||||||||||||||||||||    
T  3858849 gaaaattttatggtgaaataatacgaatgacttttctagtgaagtca 3858895  T

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Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 231 - 276
Target Start/End: Original strand, 15009241 - 15009286
Alignment:
Q  231 ggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 276  Q
    |||||||| ||||||||||||||||||||||||||| | |||||||    
T  15009241 ggaaaattctatggtgaagtcataagaatgacttttttggtgaagt 15009286  T

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Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 229 - 268
Target Start/End: Original strand, 7998360 - 7998399
Alignment:
Q  229 taggaaaattttatggtgaagtcataagaatgacttttct 268  Q
    |||||||||| |||||||||||||| ||||||||||||||    
T  7998360 taggaaaattctatggtgaagtcatgagaatgacttttct 7998399  T

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Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 232 - 318
Target Start/End: Complemental strand, 23176811 - 23176724
Alignment:
Q  232 gaaaattt-tatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaatccatgtc 318  Q
    |||||||| |||||||||||||| | |||||||||| | ||||||| |||||  | ||||||||  ||||||||| ||||| ||||||    
T  23176811 gaaaatttctatggtgaagtcatgaaaatgacttttttggtgaagttaaatgaccaatcattgaatatttgtgtacttaatgcatgtc 23176724  T

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Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 229 - 276
Target Start/End: Complemental strand, 27083031 - 27082984
Alignment:
Q  229 taggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 276  Q
    |||||||||| |||||||||||||| ||| |||||||||| |||||||    
T  27083031 taggaaaattctatggtgaagtcatcagactgacttttctggtgaagt 27082984  T

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Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 229 - 276
Target Start/End: Complemental strand, 30654776 - 30654729
Alignment:
Q  229 taggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 276  Q
    ||||||||||||||||||||||||||||| ||| |||| | |||||||    
T  30654776 taggaaaattttatggtgaagtcataagagtgatttttttggtgaagt 30654729  T

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Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 318
Target Start/End: Complemental strand, 8151451 - 8151373
Alignment:
Q  240 tatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaatccatgtc 318  Q
    ||||||| |||||| | |||||||||| | ||||||| |||||  | ||||||||  ||||||| ||||||||||||||    
T  8151451 tatggtgcagtcatgaaaatgacttttttggtgaagttaaatgaccaatcattgaatatttgtgcatttaatccatgtc 8151373  T

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Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 268
Target Start/End: Complemental strand, 39099301 - 39099263
Alignment:
Q  230 aggaaaattttatggtgaagtcataagaatgacttttct 268  Q
    ||||||||| |||||||||||||| ||||||||||||||    
T  39099301 aggaaaattctatggtgaagtcatgagaatgacttttct 39099263  T

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Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 326 - 383
Target Start/End: Complemental strand, 4108834 - 4108777
Alignment:
Q  326 tgtgtcattatattgttacttactgcaattatgtctctggttaaatcaaaattaaaca 383  Q
    |||||| ||||||  ||||||| ||||||| |||| ||| ||||||||||||||||||    
T  4108834 tgtgtcgttatatctttacttattgcaattgtgtccctgattaaatcaaaattaaaca 4108777  T

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Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 276
Target Start/End: Complemental strand, 4133199 - 4133154
Alignment:
Q  231 ggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 276  Q
    ||||||||||||||| ||||||| |||||||||||| | |||||||    
T  4133199 ggaaaattttatggtcaagtcatcagaatgacttttttggtgaagt 4133154  T

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Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 276
Target Start/End: Complemental strand, 5300137 - 5300092
Alignment:
Q  231 ggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 276  Q
    |||||||| |||||||||||||| |||||||||||| || ||||||    
T  5300137 ggaaaattctatggtgaagtcatgagaatgacttttttaatgaagt 5300092  T

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Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 326 - 383
Target Start/End: Complemental strand, 6267425 - 6267368
Alignment:
Q  326 tgtgtcattatattgttacttactgcaattatgtctctggttaaatcaaaattaaaca 383  Q
    ||||| |||||||  ||||||| ||||||||||||  || ||||||||||||||||||    
T  6267425 tgtgttattatatctttacttattgcaattatgtccttgattaaatcaaaattaaaca 6267368  T

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Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 278
Target Start/End: Complemental strand, 6446752 - 6446707
Alignment:
Q  233 aaaattttatggtgaagtcataagaatgacttttctagtgaagtca 278  Q
    |||||| |||||||||||||| | |||||||||||| |||||||||    
T  6446752 aaaattctatggtgaagtcatgataatgacttttctggtgaagtca 6446707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 318
Target Start/End: Original strand, 7290718 - 7290806
Alignment:
Q  229 taggaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaatccatgtc 318  Q
    |||||||||| ||||||||||||||   ||||| |||||| |||| || |||||||  |||||||| ||||||||  |||||| ||||||    
T  7290718 taggaaaattctatggtgaagtcatgcaaatga-ttttctggtgacgttaaatggtgaatcattgatcatttgtgcgtttaattcatgtc 7290806  T

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Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 276
Target Start/End: Original strand, 13307622 - 13307667
Alignment:
Q  231 ggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 276  Q
    |||||||| |||||||||||||| ||||||| |||||| |||||||    
T  13307622 ggaaaattctatggtgaagtcatgagaatgatttttctggtgaagt 13307667  T

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Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 279
Target Start/End: Original strand, 33906223 - 33906271
Alignment:
Q  231 ggaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaa 279  Q
    |||||||| ||||||||| | || |||||||||||||| ||||||||||    
T  33906223 ggaaaattctatggtgaaattatgagaatgacttttctggtgaagtcaa 33906271  T

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Target: scaffold0262 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 315 - 381
Target Start/End: Complemental strand, 12097 - 12031
Alignment:
Q  315 tgtccataaaatgtgtcattatattgttacttactgcaattatgtctctggttaaatcaaaattaaa 381  Q
    ||||||||| ||||||||||||||  ||||||| ||||||| |||  ||| ||||||||||||||||    
T  12097 tgtccataagatgtgtcattatatatttacttattgcaattgtgttcctgattaaatcaaaattaaa 12031  T

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Target: scaffold0009 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 229 - 276
Target Start/End: Original strand, 42346 - 42393
Alignment:
Q  229 taggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 276  Q
    ||||||||||||||||||||||||| ||||| | |||||| |||||||    
T  42346 taggaaaattttatggtgaagtcatgagaataatttttctggtgaagt 42393  T

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Target: scaffold0050 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 326 - 383
Target Start/End: Original strand, 5718 - 5775
Alignment:
Q  326 tgtgtcattatattgttacttactgcaattatgtctctggttaaatcaaaattaaaca 383  Q
    |||||||||||||  || |||| |||||||||||| ||  ||||||||||||||||||    
T  5718 tgtgtcattatatatttccttattgcaattatgtccctcattaaatcaaaattaaaca 5775  T

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Target: scaffold0312 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 311
Target Start/End: Complemental strand, 9184 - 9099
Alignment:
Q  230 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagtca----aatggtcgatcattgagcatttgtgtatttaat 311  Q
    ||||||||| |||| |||||| || |||||||||||| |  ||||||||    |||| || |||||||| ||||||||||||||||    
T  9184 aggaaaattctatgatgaagttatgagaatgacttttttgctgaagtcatgagaatgatcaatcattgaacatttgtgtatttaat 9099  T

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