View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4111_low_26 (Length: 356)
Name: NF4111_low_26
Description: NF4111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4111_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 6 - 302
Target Start/End: Original strand, 17174589 - 17174904
Alignment:
| Q |
6 |
agattctctcaatgactctgcaatccaatctttctctaaatcagatcatggcaattcaagtaacacataaaccagaatgaatgatggaaagacatgatca |
105 |
Q |
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| T |
17174589 |
agattctctcaatgactctgcaatccaatctttctctaaatcagatcatggcaattcaagtaacacataaaccagaatgaatgatggaatgacatgatca |
17174688 |
T |
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| Q |
106 |
tgaaaaatttgaaaccnnnnnnncaatgttgtcaattgtcattctta-------------------atgaagaaccagaaaacaaatgctttatatattg |
186 |
Q |
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| T |
17174689 |
tggaaaatttgaaaccaaaaaaacaatgttgtcaattgtcattcttacataataacacatggcttaatgaacaaccagaaaacaaatgctttatatattg |
17174788 |
T |
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| Q |
187 |
taatcagagtttaatacaaacaaatcaagaacctaagagggccatcaaatatgtgtaaagttaacaacatgaagacaacatatatcagatgatattgtta |
286 |
Q |
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| T |
17174789 |
taatcagagtttaatacaaacaaatcaagaacctaagagggccatcaaatatgtgtaatgttaacaacatgaagacaacatatatcagatgatattgtta |
17174888 |
T |
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| Q |
287 |
aagtaaacaagacaat |
302 |
Q |
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| T |
17174889 |
aagtaaacaagacaat |
17174904 |
T |
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