View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4111_low_27 (Length: 349)

Name: NF4111_low_27
Description: NF4111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4111_low_27
NF4111_low_27
[»] chr2 (1 HSPs)
chr2 (18-314)||(37471019-37471313)


Alignment Details
Target: chr2 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 18 - 314
Target Start/End: Complemental strand, 37471313 - 37471019
Alignment:
Q  18 aataggatattggtaaaattggaagagaaacttggaaagaacctctgacgacagctcataggcgcagttgttgacggcaaacgaacggagacacaaataa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37471313 aataggatattggtaaaattggaagagaaacttggaaagaacctctgacgacagctcataggcgcagttgttgacggcaaacgaacggagacacaaataa 37471214  T
Q  118 aacaaaacatcatctttcttctttgtatttgaacaacgttaattcattcaattgnnnnnnnnnnngttcaaattccggtgaggcctacggtggtgaaaca 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||           |||||||||||||||||||||||||||||||||||    
T  37471213 aacaaaacatcatctttcttctttgtatttgaacaacgttaattcattcaattg--tttttttttgttcaaattccggtgaggcctacggtggtgaaaca 37471116  T
Q  218 tggccgtgtctggtggtgacaacgatgatgcctccaaacaagacctctttcacctcatcaaacgctttggtgcttttgttactttcaagatcggtca 314  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37471115 tggccgtgtctggtggtgacaacgatgatgcctccaaactagacctctttcacctcatcaaacgctttggtgcttttgttactttcaagatcggtca 37471019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University