View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4111_low_28 (Length: 337)
Name: NF4111_low_28
Description: NF4111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4111_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-164; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 15 - 318
Target Start/End: Complemental strand, 5391702 - 5391399
Alignment:
| Q |
15 |
atcaaaaagacgttgaattgaagctctctcccttaactgatgtgacacatattttctatgtctcgtggaccagcatgcccacagaggctcaaaactgcga |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
5391702 |
atcaaaaagacgttgaattgaagctctctcccttaactgatgtgacacatattttctatgtctcgtggaccagcatgcccacagaggctcaaaactgcaa |
5391603 |
T |
|
| Q |
115 |
agttaacggttcaatgttaaggaacgtccttcgagccctcatcccaaatactctgaatctttgtcatgtatcccttcagacgggaatcaagcactacttt |
214 |
Q |
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| T |
5391602 |
agttaacggttcaatgttaaggaacgtccttcgagccctcatcccaaatactctgaatctttgtcatgtgtcccttcaaacgggaatcaagcactacttt |
5391503 |
T |
|
| Q |
215 |
ggatcctttgaaatagtcggtaagatcaagccccatgagtcccctttcacggaggatgtgccacgccttgtcacacccaatttctatcacacacaagagg |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5391502 |
ggatcctttgaaatagtcggtaagatcaagccccatgagtcccctttcacggaggatgtgccacgccttgtcacacccaatttctatcacacacaagagg |
5391403 |
T |
|
| Q |
315 |
atat |
318 |
Q |
| |
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|||| |
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| T |
5391402 |
atat |
5391399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 17 - 318
Target Start/End: Complemental strand, 5395511 - 5395210
Alignment:
| Q |
17 |
caaaaagacgttgaattgaagctctctcccttaactgatgtgacacatattttctatgtctcgtggaccagcatgcccacagaggctcaaaactgcgaag |
116 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
5395511 |
caaaaagacgtcgaattgaagctctctcccttaactgatgtgacacatattttctatgtctcgtggaccagcatgcctacagaggctcaaaactgcgaag |
5395412 |
T |
|
| Q |
117 |
ttaacggttcaatgttaaggaacgtccttcgagccctcatcccaaatactctgaatctttgtcatgtatcccttcagacgggaatcaagcactactttgg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||| || |||| ||||||||| | || |
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| T |
5395411 |
ttaacggttcaatgttaaggaacgtccttcgagccctcatcccaaatactctcaatctttgccatgtgtcccttcaaacaggaactaagcactacctagg |
5395312 |
T |
|
| Q |
217 |
atcctttgaaatagtcggtaagatcaagccccatgagtcccctttcacggaggatgtgccacgccttgtcacacccaatttctatcacacacaagaggat |
316 |
Q |
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|||||| |||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |
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| T |
5395311 |
atccttcgaaacgatcggtaagatcaaggcccatgagtcccccttcacggaggatgtgccacgccttgtcacacccaatttctattacacacaggaggat |
5395212 |
T |
|
| Q |
317 |
at |
318 |
Q |
| |
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|| |
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|
| T |
5395211 |
at |
5395210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 15 - 318
Target Start/End: Complemental strand, 5401660 - 5401357
Alignment:
| Q |
15 |
atcaaaaagacgttgaattgaagctctctcccttaactgatgtgacacatattttctatgtctcgtggaccagcatgcccacagaggctcaaaactgcga |
114 |
Q |
| |
|
||||||| || |||||||||||||| || || ||||| || ||||| ||||| |||||||||||||||||||||| ||||| ||||||||||| || || |
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| T |
5401660 |
atcaaaacgatgttgaattgaagctatcccctttaacagacgtgacccatatattctatgtctcgtggaccagcagacccacggaggctcaaaattgtga |
5401561 |
T |
|
| Q |
115 |
agttaacggttcaatgttaaggaacgtccttcgagccctcatcccaaatactctgaatctttgtcatgtatcccttcagacgggaatcaagcactacttt |
214 |
Q |
| |
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|| || ||| | ||||| ||||||||||||| |||||| ||||||||| ||| ||||||| ||||| || |||||||| || ||||||||| | |
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| T |
5401560 |
ggtgaatggtgccatgttgaggaacgtccttcaagccctaatcccaaatgctccaaatctttcccatgtgtctcttcagactggtgccaagcactatgta |
5401461 |
T |
|
| Q |
215 |
ggatcctttgaaatagtcggtaagatcaagccccatgagtcccctttcacggaggatgtgccacgccttgtcacacccaatttctatcacacacaagagg |
314 |
Q |
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||| |||| ||||| ||||||||||||| || ||||||||||| ||||| ||||||||||||||||| | |||||||||||||||| ||||| ||||| |
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| T |
5401460 |
ggacccttcgaaatcatcggtaagatcaaacctcatgagtcccccttcacagaggatgtgccacgcctcgacacacccaatttctattacacattagagg |
5401361 |
T |
|
| Q |
315 |
atat |
318 |
Q |
| |
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|||| |
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|
| T |
5401360 |
atat |
5401357 |
T |
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