View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4111_low_29 (Length: 334)
Name: NF4111_low_29
Description: NF4111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4111_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 29 - 319
Target Start/End: Original strand, 46777612 - 46777912
Alignment:
| Q |
29 |
ttctatatttggatagcatcagtgtatctctctcttgtattattgattggaaaatgcttgattttcgttaannnnnnnncttctcaattcttactata-- |
126 |
Q |
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| T |
46777612 |
ttctatatttggatagcatcagtgtatctctctcttgtattactgattggaaaatgcttgattttcgataaaaaaatttcttctcaattcttactataaa |
46777711 |
T |
|
| Q |
127 |
--------gatataaattatttaaagttgnnnnnnnnttcaacaacnnnnnnnttacgagaaatcgttattaattaaagtaacatcaatcaacattttac |
218 |
Q |
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| T |
46777712 |
gcactattgatataaattatttaaagtcgaaaaaaaattcaacaacaaaaaatttacgagaaattgttattaattaaagtaacatcaatcaacattttac |
46777811 |
T |
|
| Q |
219 |
aatgatcgttcgaaactacaataccaaacttcttactgggctgagtnnnnnnntaagaaatgaaattcctcttttcttttcccctcttgtgtggtatacg |
318 |
Q |
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||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46777812 |
aatgatcgttcgaaactacaataccaaacttcttacttgactgagtaaaaaaataagaaatgaaattcctcttttcttttcccctcttgtgtggtatacg |
46777911 |
T |
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| Q |
319 |
t |
319 |
Q |
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| T |
46777912 |
t |
46777912 |
T |
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