View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4111_low_3 (Length: 691)
Name: NF4111_low_3
Description: NF4111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4111_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 633; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 633; E-Value: 0
Query Start/End: Original strand, 9 - 673
Target Start/End: Complemental strand, 30768878 - 30768214
Alignment:
| Q |
9 |
agcagagatccatttaaagccagagcgacacctattataattaatgagtagcatagtcaacacctttaaaacaattcgtaacttttgtcctaaaaagaag |
108 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||| |
|
|
| T |
30768878 |
agcagatatccatttaaagccagagcgacacctattataattaatgagtagcatagtcaacacctttaaaaaaatacataacttttgtcctaaaaagaag |
30768779 |
T |
|
| Q |
109 |
taggatttcaaagggcacatgaatcataacaacaacacttaaactttattagttttaaaactcatcgttacaaaaccggttgtagggtgaggagtgactc |
208 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30768778 |
taggacttcaaagggcacatgaatcataacaacaacacttaaactttattagttttaaaactcatcgttacaaaaccggttgtagggtgaggagtgactc |
30768679 |
T |
|
| Q |
209 |
tctttataagcactttccggttagacttgcatttctccaaataaaaacacactcattatcaatatcctcatcaataagcccaaaaccaaccccaccaaat |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30768678 |
tctttataagcactttccggttagacttgcatttctccaaataaaaacacactcattatcaatatcctcatcaataagcccaaaaccaaccccaccaaat |
30768579 |
T |
|
| Q |
309 |
agaaacaactttccatagaaagcatagagaaggtgagaactagggatgaggagtactggaggagagatagttcaagtagaaggaggacacatagttcgag |
408 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30768578 |
agaaacaacttttcatagaaagcatagagaaggtgggaactagggatgaggagtactggaggagagatagttcaagtagaaggaggacacatagttcgag |
30768479 |
T |
|
| Q |
409 |
ccaccggtaaaaaagatcgtcacagcaaggtttacacatcaaaaggtcctcgcgatcgcagggttcgactctcagcacacacagccatcgaattctacga |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30768478 |
ccaccggtaaaaaagatcgtcacagcaaggtttacacatcaaaaggtcctcgcgatcgcagggttcgactctcagcacacacagccatcgaattctacga |
30768379 |
T |
|
| Q |
509 |
tgttcaagatcgcctcggctacgacagaccaagcaaagcagtggattggctcatcaagaaagcaaagtcttccattgacaagctcgcggagcttcctcca |
608 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30768378 |
tgttcaagatcgcctcggctacgacagaccaagcaaagcagtggattggctcatcaagaaagcaaagtcttccattgacaagctcgcggagcttcctcca |
30768279 |
T |
|
| Q |
609 |
tggcatccaatcggcgaaaatcaaactctgaaacctctagaagaagttcagaatgtagttgcaaa |
673 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30768278 |
tggcatccaatcagcgaaaatcaaactctgaaacctctagaagaagttcagaatgtagttgcaaa |
30768214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 366 - 619
Target Start/End: Complemental strand, 39077495 - 39077242
Alignment:
| Q |
366 |
ggaggagagatagttcaagtagaaggaggacacatagttcgagccaccggtaaaaaagatcgtcacagcaaggtttacacatcaaaaggtcctcgcgatc |
465 |
Q |
| |
|
|||||||| ||||||||||| ||||||| ||||| || | || || |||| |||||| | || || ||||| ||||| | ||||||||||| |||| |
|
|
| T |
39077495 |
ggaggagaaatagttcaagttcaaggaggccacattgtaagggcgacaggtagaaaagacagacatagtaaggtatacactgcgaaaggtcctcgtgatc |
39077396 |
T |
|
| Q |
466 |
gcagggttcgactctcagcacacacagccatcgaattctacgatgttcaagatcgcctcggctacgacagaccaagcaaagcagtggattggctcatcaa |
565 |
Q |
| |
|
| | |||||| | |||||||||||||| || ||||||| ||||||||||| || ||||||||||||||||| || ||||| || |||||||| ||||| |
|
|
| T |
39077395 |
gacgtgttcgattatcagcacacacagcaattcaattctatgatgttcaagaccgtctcggctacgacagaccgagtaaagctgttgattggcttatcaa |
39077296 |
T |
|
| Q |
566 |
gaaagcaaagtcttccattgacaagctcgcggagcttcctccatggcatccaat |
619 |
Q |
| |
|
|| || |||||| |||||||||| || | ||||||| |||||| ||||||| |
|
|
| T |
39077295 |
aaaggctaagtctgccattgacaaacttgatcagcttccaccatggaatccaat |
39077242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 420 - 571
Target Start/End: Original strand, 22327946 - 22328097
Alignment:
| Q |
420 |
aaagatcgtcacagcaaggtttacacatcaaaaggtcctcgcgatcgcagggttcgactctcagcacacacagccatcgaattctacgatgttcaagatc |
519 |
Q |
| |
|
||||| |||||||| || |||| ||| | |||||||| || || ||| | || ||||||||||| ||||| || || |||||||||| || ||||||| |
|
|
| T |
22327946 |
aaagaccgtcacagtaaagtttgcaccgcgaaaggtccccgtgaccgccgtgtacgactctcagcccacactgcgattcaattctacgacgtgcaagatc |
22328045 |
T |
|
| Q |
520 |
gcctcggctacgacagaccaagcaaagcagtggattggctcatcaagaaagc |
571 |
Q |
| |
|
| |||||||||||| | ||||| |||||||| ||||||||||| || ||||| |
|
|
| T |
22328046 |
gtctcggctacgaccggccaagtaaagcagtcgattggctcattaaaaaagc |
22328097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 167 - 217
Target Start/End: Complemental strand, 44573423 - 44573371
Alignment:
| Q |
167 |
aactcatcgttacaaaaccgg-ttgtagggtgaggagtgact-ctctttataa |
217 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||||||||| || |||||||||| |
|
|
| T |
44573423 |
aactcatccttacaaaaccggcttgtagggtgaggagtgcctcctctttataa |
44573371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University