View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4111_low_31 (Length: 328)
Name: NF4111_low_31
Description: NF4111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4111_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 12 - 311
Target Start/End: Complemental strand, 27570771 - 27570475
Alignment:
| Q |
12 |
agagacagtgttaggaggcaagaagataatgaatgttgaacgcaagttcatgagacattataaaccacattttattttatttttgcaagaccaactccat |
111 |
Q |
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| T |
27570771 |
agagacagtgttaggaggcaagaagataatgaatgttgaacgcaagttcatgagacattataaaccacattttattttatttttgcaagaccaactccat |
27570672 |
T |
|
| Q |
112 |
gatatttgcataccaggacagaactttgaggtccttgcattcctaattaagtatcaaggtcaattaaactttctcttccatgaataggtctgttttatgg |
211 |
Q |
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| T |
27570671 |
gatatttgcataccaggacagaactttgaggtccttgcattcctaattaagtatcaaggtcaattaaactttctattccatgaataggtctgttttatgg |
27570572 |
T |
|
| Q |
212 |
tagggtagacctctaagacaataccatgtgatcttatatatgttgctcttgtctccatgtagatgctatgactccatcctaatcctatactacagtatat |
311 |
Q |
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| T |
27570571 |
tagggtagacctctaagacaataccatgtgatcttatata---tgctcttgtctccttgtagattccatgactccatcctgatcctatactacagtatat |
27570475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 86 - 310
Target Start/End: Original strand, 27412166 - 27412387
Alignment:
| Q |
86 |
ttttatttttgcaagaccaactccatgatatttgcataccaggacagaactttgaggtccttgcattcctaattaagtatcaaggtcaattaaactttct |
185 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27412166 |
ttttatttttgtaagaccaactccatgatatttgcataccaggacagaactttgaggtccttgcattcctaattaagtatcaaggtcaattaaactttct |
27412265 |
T |
|
| Q |
186 |
cttccatgaataggtctgttttatggtagggtagacctctaagacaataccatgtgatcttatatatgttgctcttgtctccatgtagatgctatgactc |
285 |
Q |
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| T |
27412266 |
attccatgaataggtctgttttatggtagggtagacctctaagacaataccatgtgatcttatata---tgctcttgtctccttgtagattccatgactc |
27412362 |
T |
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| Q |
286 |
catcctaatcctatactacagtata |
310 |
Q |
| |
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|||||| |||||||||||||||||| |
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| T |
27412363 |
catcctgatcctatactacagtata |
27412387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 47 - 311
Target Start/End: Original strand, 27422677 - 27422935
Alignment:
| Q |
47 |
ttgaacgcaagttcatgagacattataaaccacattttattttatttttgcaagaccaactccatgatatttgcataccaggacagaactttgaggtcct |
146 |
Q |
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|||||| |||| |||||| || ||| ||||||||||||| ||||||||| ||| |||||| | ||||||||||||| ||| ||||||| | ||| |
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| T |
27422677 |
ttgaacacaagaacatgagccactatgaaccacattttat---atttttgcatgacagactccacaaaatttgcataccagaacaaaactttgcgatccc |
27422773 |
T |
|
| Q |
147 |
tgcattcctaattaagtatcaaggtcaattaaactttctcttccatgaataggtctgttttatggtagggtagacctctaagacaataccatgtgatctt |
246 |
Q |
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||| ||||||| || ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
27422774 |
tgccatcctaatcaaatatgaaggtcaattaaactttctattccatgaataggtctgttttatggtagggtaggcctctaagacaataccatgtgatctt |
27422873 |
T |
|
| Q |
247 |
atatatgttgctcttgtctccatgtagatgctatgactccatcctaatcctatactacagtatat |
311 |
Q |
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||||| ||||||||||||| ||||||| | ||||||||||||| ||||||||||||||||||| |
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| T |
27422874 |
atata---tgctcttgtctccttgtagattccatgactccatcctgatcctatactacagtatat |
27422935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 74 - 185
Target Start/End: Original strand, 27415068 - 27415176
Alignment:
| Q |
74 |
aaccacattttattttatttttgcaagaccaactccatgatatttgcataccaggacagaactttgaggtccttgcattcctaattaagtatcaaggtca |
173 |
Q |
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||||||||||||| ||||| |||||| | || |||||||||||||||||||||||||| |||| ||||||||| ||| ||||||||||||||||||| |
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| T |
27415068 |
aaccacattttatattatta---caagacaagcttcatgatatttgcataccaggacagaagtttgcggtccttgccttcttaattaagtatcaaggtca |
27415164 |
T |
|
| Q |
174 |
attaaactttct |
185 |
Q |
| |
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|||||||||||| |
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| T |
27415165 |
attaaactttct |
27415176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 89 - 188
Target Start/End: Original strand, 27425324 - 27425423
Alignment:
| Q |
89 |
tatttttgcaagaccaactccatgatatttgcataccaggacagaactttgaggtccttgcattcctaattaagtatcaaggtcaattaaactttctctt |
188 |
Q |
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||||||||| |||| |||||||||||||||||||||| | || |||||||| ||||| ||| || |||| |||||| |||||| |||||||||||||||| |
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| T |
27425324 |
tatttttgccagacaaactccatgatatttgcatacctgaacggaactttgcggtccctgccttgctaaataagtaacaaggttaattaaactttctctt |
27425423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 70 - 217
Target Start/End: Complemental strand, 27566595 - 27566449
Alignment:
| Q |
70 |
tataaaccacattttattttatttttgcaagaccaactccatgatatttgcataccaggacagaactttgaggtccttgcattcctaattaagtatcaag |
169 |
Q |
| |
|
||||||||||||||||| | ||||| || ||| || ||||| | |||||||||||| ||||||||||| ||||| |||||| |||| |||||| || | |
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| T |
27566595 |
tataaaccacattttatatagttttt-caggacaaattccattaaatttgcataccataacagaactttgcggtccctgcattgctaaataagtaacatg |
27566497 |
T |
|
| Q |
170 |
gtcaattaaactttctcttccatgaataggtctgttttatggtagggt |
217 |
Q |
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||||||||||||||||||| ||| ||||| ||||||| |||| |||| |
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| T |
27566496 |
gtcaattaaactttctcttgcattgataggcctgttttttggtggggt |
27566449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 109 - 185
Target Start/End: Original strand, 27419887 - 27419963
Alignment:
| Q |
109 |
catgatatttgcataccaggacagaactttgaggtccttgcattcctaattaagtatcaaggtcaattaaactttct |
185 |
Q |
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|||||||||||| |||||| ||||||||| | ||||| ||| ||| ||||||||||||||||||||||||||||||| |
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| T |
27419887 |
catgatatttgcttaccagaacagaacttcgcggtccctgccttcttaattaagtatcaaggtcaattaaactttct |
27419963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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