View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4111_low_33 (Length: 306)
Name: NF4111_low_33
Description: NF4111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4111_low_33 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 17 - 153
Target Start/End: Original strand, 24928629 - 24928765
Alignment:
| Q |
17 |
acttatcattctctgaattcaagaactcttcaaccacagtcttctttggtggaactgaagataccatcttggaaatcatagagttttcatgattagattc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24928629 |
acttatcattctctgaattcaagaactcttcaaccacagtcttctttggtggaactgaagataccatcttggaaatcatagagttttcatgattagattc |
24928728 |
T |
|
| Q |
117 |
tgcagtgaagaacacaattagaacataatcacaacaa |
153 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24928729 |
tgcagtgaagaacacaattagaacataatcacaacaa |
24928765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 183 - 298
Target Start/End: Original strand, 24928798 - 24928913
Alignment:
| Q |
183 |
catacccaagttggacaaatcaagttcctcagagttttgaagaagtagaaggtcattcttttcattctctttctctctcctcctcatctcaaggaacaaa |
282 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24928798 |
catacccaagttggacaaatcaagttcctcagagttttgaagaagtagaaggtcattcttttcattctctttctctctcctcctcatctcaaggaacaaa |
24928897 |
T |
|
| Q |
283 |
gcaagctcttcatctc |
298 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
24928898 |
gcaagctcttcatctc |
24928913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 239 - 289
Target Start/End: Complemental strand, 31869878 - 31869828
Alignment:
| Q |
239 |
tcttttcattctctttctctctcctcctcatctcaaggaacaaagcaagct |
289 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31869878 |
tcttttcattctctttctctctcctcctcatctcaaggaacaaagcaagct |
31869828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University