View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4111_low_36 (Length: 280)
Name: NF4111_low_36
Description: NF4111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4111_low_36 |
 | |
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| [»] scaffold0061 (1 HSPs) |
| | |
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| [»] scaffold0017 (1 HSPs) |
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| [»] scaffold0012 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 8845339 - 8845073
Alignment:
| Q |
1 |
aagaggagaaacaatacagtgaagaagataatgatgaacaaaaatcagaggcaaaagttgatgaagatgataataaagatatgttctcaactgatgctac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
8845339 |
aagaggagaaacaatacagtgaagaagataatgatgaacaaaaatcagaggcaaaagttgatgaagatgataataaagatatgttctcaactaatgctac |
8845240 |
T |
|
| Q |
101 |
tgatcctgatgaaccaatatctgcagaaaaagacactgtttgggaatcgattccagtactcaaagaaaagatgcatgcgcaccagaaaaaggcttttaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8845239 |
tgatcctgatgaaccaatatctgcagaaaaagacactgtttgggaatcgattccagaactcaaagaaaagatgcatgcgcaccagaaaaaggcttttaaa |
8845140 |
T |
|
| Q |
201 |
tttctttggcaaaacattgctggctccatggaaccatccctcatgcaagaaagatccgaaacaaatg |
267 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8845139 |
tttctttggcaaaacattgctggctccatggaaccatccctcatgcaagaaagatccgaaacaaatg |
8845073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 8822531 - 8822793
Alignment:
| Q |
1 |
aagaggagaaacaatacagtgaagaagataatgatgaacaaaaatcagaggcaaaagttgatgaagatgataataaagatatgttctcaactgatgctac |
100 |
Q |
| |
|
|||||||||||||||| |||| ||||||||| | ||| ||||||||||| ||||||||||||||||| ||||||| | |||||| ||||| ||| || |
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| T |
8822531 |
aagaggagaaacaataaagtggagaagataacg-tgataaaaaatcagagccaaaagttgatgaagattataataagcacatgttcacaactcatgttat |
8822629 |
T |
|
| Q |
101 |
tgatcctgatgaaccaatatctgcagaaaaagacactgtttgggaatcgattccagtactcaaagaaaagatgcatgcgcaccagaaaaaggcttttaaa |
200 |
Q |
| |
|
|||||||||||||||| ||||| |||| |||||| ||||||| ||| |||||| | | |||||||||||||||||||||| ||||||| || ||| || |
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|
| T |
8822630 |
tgatcctgatgaaccattatctaaagaagaagacaatgtttggaaattgattcctgaattcaaagaaaagatgcatgcgcatcagaaaagtgcctttgaa |
8822729 |
T |
|
| Q |
201 |
tttctttggcaaaacattgctggctccatggaaccatccctcatgcaagaaagatccgaaacaa |
264 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
8822730 |
tttctttggcaaaacatcattggttccatggaaccatccctcatgcaagaaagatccaaaacaa |
8822793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 8809450 - 8809184
Alignment:
| Q |
1 |
aagaggagaaacaatacagtgaagaagataatgatgaacaaaaatcagaggcaaaagttgatgaagatgataataaagatatgttctcaactgatgctac |
100 |
Q |
| |
|
||||||||||||||| ||||| | |||||| | |||||||||||||| || ||||||| || ||||||||||||| |||||||||| |||| || | | |
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|
| T |
8809450 |
aagaggagaaacaatgcagtggaaaagatactaatgaacaaaaatcaaagcaaaaagtttataaagatgataataatgatatgttcttaactcattccaa |
8809351 |
T |
|
| Q |
101 |
tgatcct---gatgaaccaatatctgcagaaaaagacactgtttgggaatcgattccagtactcaaagaaaagatgcatgcgcaccagaaaaaggctttt |
197 |
Q |
| |
|
||||||| ||||||||| |||| || | |||||| ||||||||||| ||||| | | ||||||||||||||||||||||||||||||| |||||| |
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| T |
8809350 |
tgatcctcatgatgaaccattatcaaaagtataagacaatgtttgggaattgattcttgaattcaaagaaaagatgcatgcgcaccagaaaaaagctttt |
8809251 |
T |
|
| Q |
198 |
aaatttctttggcaaaacattgctggctccatggaaccatccctcatgcaagaaagatccgaaacaa |
264 |
Q |
| |
|
||||||| | |||||| |||| ||| ||| |||||||||||| || | |||||||||| ||||||| |
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|
| T |
8809250 |
gaatttctatagcaaaaaattgttggttccgtggaaccatcccccacgtaagaaagatctgaaacaa |
8809184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 111; Significance: 4e-56; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 32250808 - 32250555
Alignment:
| Q |
1 |
aagaggagaaacaatacagtgaagaagataatgatgaacaaaaatcagaggcaaaagttgatgaagatgataataaagatatgttctcaactgatgctac |
100 |
Q |
| |
|
||||||||||||| | |||||||||| |||| || ||| ||||||||| ||||||||||||||||| ||||||| ||||||||||| ||| ||| ||| |
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|
| T |
32250808 |
aagaggagaaacagtgcagtgaagaaaataagga---acataaatcagagccaaaagttgatgaagattataataatgatatgttctcgactcatgttac |
32250712 |
T |
|
| Q |
101 |
tgatcctgatgaaccaatatctgcagaaaaagacactgtttgggaatcgattccagtactcaaagaaaagatgcatgcgcaccagaaaaaggcttttaaa |
200 |
Q |
| |
|
|||||||||||||||| | || |||| |||| ||||||||||| |||||| | ||| ||||||||||||||| ||||||||||| |||||| || |
|
|
| T |
32250711 |
tgatcctgatgaaccattgactaatgaaatcgacaatgtttgggaattgattcctgaacttgaagaaaagatgcatgaacaccagaaaaaagcttttgaa |
32250612 |
T |
|
| Q |
201 |
tttctttggcaaaacattgctggctccatggaaccatccctcatgcaagaaagatcc |
257 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| |||||| |||||| |||| |
|
|
| T |
32250611 |
tttctttggcaaaacattgctggctctatggaaccatcactcatggaagaaaaatcc |
32250555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 34 - 265
Target Start/End: Original strand, 38208547 - 38208775
Alignment:
| Q |
34 |
atgaacaaaaatcagaggcaaaagttgatgaagatgataataaagatatgttctcaactgatgctactgatcctgatgaaccaatatctgcagaaaaaga |
133 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||| || | |||| |||||||| ||||||||||||||||||||| ||||||| |||||| || |
|
|
| T |
38208547 |
atgaacaaaaatcatagctaaaagttgatgaagatgatgat---ggtatgatctcaactcatgctactgatcctgatgaactaatatctaaagaaaatga |
38208643 |
T |
|
| Q |
134 |
cactgtttgggaatcgattccagtactcaaagaaaagatgcatgcgcaccagaaaaaggcttttaaatttctttggcaaaacattgctggctccatggaa |
233 |
Q |
| |
|
|| |||||| ||| ||||| || | |||||| ||||||||||| ||||||||||| |||| |||||| |||||||||||| ||||||| | |||| |
|
|
| T |
38208644 |
caaagtttggaaattgattcaagaaatcaaaggtaagatgcatgcatgccagaaaaaggtttttgaatttccatggcaaaacattactggctcaacggaa |
38208743 |
T |
|
| Q |
234 |
ccatccctcatgcaagaaagatccgaaacaaa |
265 |
Q |
| |
|
||||| ||||| |||||| || | ||||||| |
|
|
| T |
38208744 |
ccatcattcatgaaagaaaaattcaaaacaaa |
38208775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 26 - 169
Target Start/End: Complemental strand, 7412199 - 7412056
Alignment:
| Q |
26 |
agataatgatgaacaaaaatcagaggcaaaagttgatgaagatgataataaagatatgttctcaactgatgctactgatcctgatgaaccaatatctgca |
125 |
Q |
| |
|
||||||| |||||||||||| |||| |||||||||||| | ||||| ||| ||||||||| |||| |||| |||||| |||||||||||||||| | |
|
|
| T |
7412199 |
agataataatgaacaaaaattagagacaaaagttgatgtacatgatgctaatcatatgttcttaactcatgccactgattttgatgaaccaatatctaaa |
7412100 |
T |
|
| Q |
126 |
gaaaaagacactgtttgggaatcgattccagtactcaaagaaaa |
169 |
Q |
| |
|
|||||| | | ||||| ||||| |||||||| |||| ||||||| |
|
|
| T |
7412099 |
gaaaaaaatattgtttaggaattgattccagaactcgaagaaaa |
7412056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 26 - 122
Target Start/End: Complemental strand, 32228393 - 32228297
Alignment:
| Q |
26 |
agataatgatgaacaaaaatcagaggcaaaagttgatgaagatgataataaagatatgttctcaactgatgctactgatcctgatgaaccaatatct |
122 |
Q |
| |
|
||||||| |||||||||||||| | | || ||||||| |||||||| ||| ||||||||| |||| | ||||||||| |||||||||||||||| |
|
|
| T |
32228393 |
agataataatgaacaaaaatcaaatacgaaggttgatgcagatgatactaatcatatgttctgaactcaagctactgattttgatgaaccaatatct |
32228297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 96 - 252
Target Start/End: Complemental strand, 38208973 - 38208817
Alignment:
| Q |
96 |
gctactgatcctgatgaaccaatatctgcagaaaaagacactgtttgggaatcgattccagtactcaaagaaaagatgcatgcgcaccagaaaaaggctt |
195 |
Q |
| |
|
|||||||||||| |||||| |||| || | |||| |||| ||||| | ||| ||||| || | |||||| || | |||||| ||| || |||| |||| |
|
|
| T |
38208973 |
gctactgatccttatgaactaataactaaacaaaatgacaatgtttcgaaattgattcaagaaatcaaaggtaaaacgcatgcacactaggaaaaagctt |
38208874 |
T |
|
| Q |
196 |
ttaaatttctttggcaaaacattgctggctccatggaaccatccctcatgcaagaaa |
252 |
Q |
| |
|
|| | |||||||||||||||||| || |||| ||||||| ||| |||||| |||||| |
|
|
| T |
38208873 |
ttgagtttctttggcaaaacattactagctcaatggaacaatcactcatgaaagaaa |
38208817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 55 - 252
Target Start/End: Original strand, 36374722 - 36374919
Alignment:
| Q |
55 |
aagttgatgaagatgataataaagatatgttctcaactgatgctactgatcctgatgaaccaatatctgcagaaaaagacactgtttgggaatcgattcc |
154 |
Q |
| |
|
||||||||||||||| |||||| |||| ||||||||||||||||||||||| || |||||||||||| |||||| || | ||||||||||| |||||| |
|
|
| T |
36374722 |
aagttgatgaagatgttaataatgatacgttctcaactgatgctactgatcttggtgaaccaatatccaaagaaaatgatagtgtttgggaattgattcc |
36374821 |
T |
|
| Q |
155 |
agtactcaaagaaaagatgcatgcgcaccagaaaaaggcttttaaatttctttggcaaaacattgctggctccatggaaccatccctcatgcaagaaa |
252 |
Q |
| |
|
| |||||||||||| |||||||| ||||||||||| |||||| ||||||| ||| | |||||||| || || ||||| | ||| |||||| |||||| |
|
|
| T |
36374822 |
tgaactcaaagaaaacatgcatgcacaccagaaaaaagcttttgaatttctctggaagaacattgcagggtctatggagcaatcactcatggaagaaa |
36374919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0061
Description:
Target: scaffold0061; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 111
Target Start/End: Original strand, 65591 - 65696
Alignment:
| Q |
3 |
gaggagaaacaatacagtgaagaagataatgatgaacaaaaatcagaggcaaaagttgatgaagatgataataaagatatgttctcaactgatgctactg |
102 |
Q |
| |
|
||||||| |||||| ||| ||||| |||| |||||||||||||| || |||||||||||||||||| || | | |||| ||| |||| ||||||||| |
|
|
| T |
65591 |
gaggagacacaatatggtggagaaggtaataatgaacaaaaatcatagccaaaagttgatgaagatg---atgacggtatgatctgaactcatgctactg |
65687 |
T |
|
| Q |
103 |
atcctgatg |
111 |
Q |
| |
|
||||||||| |
|
|
| T |
65688 |
atcctgatg |
65696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0017
Description:
Target: scaffold0017; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 111
Target Start/End: Complemental strand, 133041 - 132936
Alignment:
| Q |
3 |
gaggagaaacaatacagtgaagaagataatgatgaacaaaaatcagaggcaaaagttgatgaagatgataataaagatatgttctcaactgatgctactg |
102 |
Q |
| |
|
||||||| |||||| ||| ||||| |||| |||||||||||||| || |||||||||||||||||| || | | |||| ||| |||| ||||||||| |
|
|
| T |
133041 |
gaggagacacaatatggtggagaaggtaataatgaacaaaaatcatagccaaaagttgatgaagatg---atgacggtatgatctgaactcatgctactg |
132945 |
T |
|
| Q |
103 |
atcctgatg |
111 |
Q |
| |
|
||||||||| |
|
|
| T |
132944 |
atcctgatg |
132936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 211
Target Start/End: Original strand, 164886 - 165002
Alignment:
| Q |
94 |
atgctactgatcctgatgaaccaatatctgcagaaaaagacactgtttgggaatcgattccagtactcaaagaaaagatgcatgcgcaccagaaaaaggc |
193 |
Q |
| |
|
||||| ||||||| |||||||||||||| ||||| |||| ||||||||||| |||| | | ||| |||||||| ||||||| |||||| | || | |
|
|
| T |
164886 |
atgcttctgatcccaatgaaccaatatctaaagaaattgacaatgtttgggaattgatt-ctgaactaaaagaaaatatgcatgtgcaccaaattaaagg |
164984 |
T |
|
| Q |
194 |
ttttaaatttctttggca |
211 |
Q |
| |
|
|||| ||||||||||||| |
|
|
| T |
164985 |
ttttgaatttctttggca |
165002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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