View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4111_low_4 (Length: 614)

Name: NF4111_low_4
Description: NF4111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4111_low_4
NF4111_low_4
[»] chr3 (11 HSPs)
chr3 (200-346)||(5565257-5565403)
chr3 (58-191)||(5565170-5565302)
chr3 (158-274)||(31896518-31896633)
chr3 (76-156)||(14175288-14175364)
chr3 (158-274)||(31945875-31945990)
chr3 (239-292)||(13539565-13539618)
chr3 (158-274)||(31912227-31912342)
chr3 (83-151)||(13539487-13539552)
chr3 (2-48)||(50834417-50834465)
chr3 (2-48)||(50841388-50841436)
chr3 (158-274)||(31688234-31688349)
[»] chr2 (1 HSPs)
chr2 (391-595)||(274714-274915)
[»] chr8 (1 HSPs)
chr8 (20-111)||(43618606-43618697)
[»] chr7 (1 HSPs)
chr7 (68-115)||(7854246-7854293)
[»] scaffold0007 (1 HSPs)
scaffold0007 (91-169)||(257658-257735)
[»] scaffold0003 (2 HSPs)
scaffold0003 (175-274)||(42747-42845)
scaffold0003 (158-274)||(36571-36686)
[»] chr6 (1 HSPs)
chr6 (175-274)||(27444516-27444614)


Alignment Details
Target: chr3 (Bit Score: 95; Significance: 4e-46; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 200 - 346
Target Start/End: Original strand, 5565257 - 5565403
Alignment:
Q  200 gagttgaaccaccgttgttgatcaccgcgttggaattcgctcttcaacgcgtcggggtcgctgtcagaagcttcttttattttgcaacgttaattgttat 299  Q
    |||||| |||||||| ||||| ||| |||| ||||||||||||||| || ||||  ||| ||||||||||||||||||||||||||| ||||||||||||    
T  5565257 gagttgcaccaccgtcgttgaccactgcgtcggaattcgctcttcaccgtgtcgatgtcactgtcagaagcttcttttattttgcaaggttaattgttat 5565356  T
Q  300 tttcagtttttgtattcctcatttctaatactgaatcattcattgat 346  Q
    |||| | ||||||||||||||||||||||||||||||||||||||||    
T  5565357 tttctgcttttgtattcctcatttctaatactgaatcattcattgat 5565403  T

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Target: chr3; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 58 - 191
Target Start/End: Original strand, 5565170 - 5565302
Alignment:
Q  58 ttttttagccttcttccactaaagtaaaagcatcatcgtcttcatctcttcatcctctccgaaaacccacttgctttccaccacgccggagttgcaccac 157  Q
    ||||| |||||||| ||||||||||||||||||||| ||||| |||||||| |||||| | |||||||||||| ||||||||||||||||||||||||||    
T  5565170 tttttcagccttctcccactaaagtaaaagcatcatagtcttaatctcttcgtcctctac-aaaacccacttgttttccaccacgccggagttgcaccac 5565268  T
Q  158 catcgttgaccatcgcatcggaattcgctcttca 191  Q
    | ||||||||||  || |||||||||||||||||    
T  5565269 cgtcgttgaccactgcgtcggaattcgctcttca 5565302  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 158 - 274
Target Start/End: Complemental strand, 31896633 - 31896518
Alignment:
Q  158 catcgttgaccatcgcatcggaattcgctcttcatcgcaccagagttgaaccaccgttgttgatcaccgcgttggaattcgctcttcaacgcgtcggggt 257  Q
    |||||||||||| ||| |||||||  |||||| | ||| || |||||| |||||| ||||| |||||||||| || |||||||||||| |||||| | ||    
T  31896633 catcgttgaccaccgcgtcggaatatgctcttaaccgcgccggagttgcaccacccttgttaatcaccgcgtcgg-attcgctcttcatcgcgtcagtgt 31896535  T
Q  258 cgctgtcagaagcttct 274  Q
    |||||| ||||||||||    
T  31896534 cgctgttagaagcttct 31896518  T

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Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 76 - 156
Target Start/End: Complemental strand, 14175364 - 14175288
Alignment:
Q  76 ctaaagtaaaagcatcatcgtcttcatctcttcatcctctccgaaaacccacttgctttccaccacgccggagttgcacca 156  Q
    ||||||||||||||||   |||||||| ||||| |||||| | |||||||| |||||||||||||||||||||||||||||    
T  14175364 ctaaagtaaaagcatc---gtcttcatttcttcgtcctctac-aaaacccatttgctttccaccacgccggagttgcacca 14175288  T

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Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 158 - 274
Target Start/End: Complemental strand, 31945990 - 31945875
Alignment:
Q  158 catcgttgaccatcgcatcggaattcgctcttcatcgcaccagagttgaaccaccgttgttgatcaccgcgttggaattcgctcttcaacgcgtcggggt 257  Q
    |||||||||||| ||| |||||||  |||||| | ||| || |||||| |||||| ||||| |||||||||| || |||||||||||| |||| | | ||    
T  31945990 catcgttgaccaccgcgtcggaatatgctcttaaccgcgccggagttgcaccacccttgttaatcaccgcgtcgg-attcgctcttcatcgcgccagtgt 31945892  T
Q  258 cgctgtcagaagcttct 274  Q
    |||||| ||||||||||    
T  31945891 cgctgttagaagcttct 31945875  T

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Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 239 - 292
Target Start/End: Original strand, 13539565 - 13539618
Alignment:
Q  239 ctcttcaacgcgtcggggtcgctgtcagaagcttcttttattttgcaacgttaa 292  Q
    ||||||| ||||||||| | |||||||||||||||||||||||||||| |||||    
T  13539565 ctcttcatcgcgtcgggtttgctgtcagaagcttcttttattttgcaaggttaa 13539618  T

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Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 158 - 274
Target Start/End: Complemental strand, 31912342 - 31912227
Alignment:
Q  158 catcgttgaccatcgcatcggaattcgctcttcatcgcaccagagttgaaccaccgttgttgatcaccgcgttggaattcgctcttcaacgcgtcggggt 257  Q
    |||||||||||| ||| |||||||  |||||| | ||  || |||||| |||||| ||||| |||||||||| || |||||||||||| |||| | | ||    
T  31912342 catcgttgaccaccgcgtcggaatatgctcttaaccgtgccggagttgcaccacccttgttaatcaccgcgtcgg-attcgctcttcatcgcgccagtgt 31912244  T
Q  258 cgctgtcagaagcttct 274  Q
    |||||| ||||||||||    
T  31912243 cgctgttagaagcttct 31912227  T

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Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 83 - 151
Target Start/End: Original strand, 13539487 - 13539552
Alignment:
Q  83 aaaagcatcatcgtcttcatctcttcatcctctccgaaaacccacttgctttccaccacgccggagttg 151  Q
    ||||||||||| |||||||||||||||||||||  | |||||||| |||||| ||||| ||||||||||    
T  13539487 aaaagcatcattgtcttcatctcttcatcctct--gcaaacccacatgcttt-caccatgccggagttg 13539552  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 48
Target Start/End: Original strand, 50834417 - 50834465
Alignment:
Q  2 ttcttcttct--tcttcaacacacgaaaacccttcttcttattccctca 48  Q
    ||||||||||  |||||||||||| ||||||||||||||||| ||||||    
T  50834417 ttcttcttctgatcttcaacacacaaaaacccttcttcttatgccctca 50834465  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 48
Target Start/End: Complemental strand, 50841436 - 50841388
Alignment:
Q  2 ttcttcttct--tcttcaacacacgaaaacccttcttcttattccctca 48  Q
    ||||||||||  |||||||||||| ||||||||||||||||| ||||||    
T  50841436 ttcttcttctgatcttcaacacacaaaaacccttcttcttatgccctca 50841388  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 158 - 274
Target Start/End: Original strand, 31688234 - 31688349
Alignment:
Q  158 catcgttgaccatcgcatcggaattcgctcttcatcgcaccagagttgaaccaccgttgttgatcaccgcgttggaattcgctcttcaacgcgtcggggt 257  Q
    |||||||||||| ||| || ||||  |||||| | |||  | |||||| |||||| ||||| ||||||||||  || ||||||||||| |||| | | ||    
T  31688234 catcgttgaccaccgcgtcagaatatgctcttaaccgcgtcggagttgcaccacccttgttaatcaccgcgtcaga-ttcgctcttcatcgcgccagtgt 31688332  T
Q  258 cgctgtcagaagcttct 274  Q
    |||||| ||||||||||    
T  31688333 cgctgttagaagcttct 31688349  T

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Target: chr2 (Bit Score: 76; Significance: 8e-35; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 391 - 595
Target Start/End: Original strand, 274714 - 274915
Alignment:
Q  391 acaagatatcaccattactggtgcgagcaccttgcctggtgatgaggtatatcttctaatcattcatttacttctacaaattgtatgtaatctttaccta 490  Q
    ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||    || || ||||||| ||||||| ||| ||     
T  274714 acaagatattaccattactggtgccagcaccttgcctggtgatgaggtatatcttccaatcattcat----ttgtataaattgtttgtaatccttatctg 274809  T
Q  491 cttactacttcagaagga-nnnnnnngttactccagcgttgatgtgggaagtttttctggtgtttataattatctctcagatgatatacaagttgagagg 589  Q
    ||| ||||||| | ||||        ||||||||||| ||||||||||||| | ||| |||||||||||||||||||  |||||| |||| |||||||||    
T  274810 cttgctacttctggaggattttttttgttactccagcattgatgtgggaagctgttccggtgtttataattatctcttggatgatgtacaggttgagagg 274909  T
Q  590 gtggtc 595  Q
     |||||    
T  274910 atggtc 274915  T

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Target: chr8 (Bit Score: 68; Significance: 5e-30; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 20 - 111
Target Start/End: Complemental strand, 43618697 - 43618606
Alignment:
Q  20 acacgaaaacccttcttcttattccctcatttcgttaattttttagccttcttccactaaagtaaaagcatcatcgtcttcatctcttcatc 111  Q
    |||| ||||||||||||||||| |||||||||  || ||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  43618697 acacaaaaacccttcttcttatgccctcatttgcttcattttttagccttctcccactaaagtaaaagcatcatcgtcttcatctcttcatc 43618606  T

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Target: chr7 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 68 - 115
Target Start/End: Original strand, 7854246 - 7854293
Alignment:
Q  68 ttcttccactaaagtaaaagcatcatcgtcttcatctcttcatcctct 115  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||    
T  7854246 ttctcccactaaagtaaaagcatcatcgtcttcatctcttcatcctct 7854293  T

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Target: scaffold0007 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 91 - 169
Target Start/End: Original strand, 257658 - 257735
Alignment:
Q  91 catcgtcttcatctcttcatcctctccgaaaacccacttgctttccaccacgccggagttgcaccaccatcgttgacca 169  Q
    |||||||||||| ||||| |||||| | |||||||| ||||||||| |||||||||||||  |||||  ||||||||||    
T  257658 catcgtcttcatttcttcgtcctctac-aaaacccatttgctttcctccacgccggagttaaaccactgtcgttgacca 257735  T

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Target: scaffold0003 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 175 - 274
Target Start/End: Complemental strand, 42845 - 42747
Alignment:
Q  175 tcggaattcgctcttcatcgcaccagagttgaaccaccgttgttgatcaccgcgttggaattcgctcttcaacgcgtcggggtcgctgtcagaagcttct 274  Q
    |||||||  |||||| | ||| || ||||||||||||||||||| |||||||||| || |||||||||| | |||  | | |||||||| ||||||||||    
T  42845 tcggaatatgctcttaaccgcgccggagttgaaccaccgttgttaatcaccgcgtcgg-attcgctctttatcgcaccagtgtcgctgttagaagcttct 42747  T

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Target: scaffold0003; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 158 - 274
Target Start/End: Complemental strand, 36686 - 36571
Alignment:
Q  158 catcgttgaccatcgcatcggaattcgctcttcatcgcaccagagttgaaccaccgttgttgatcaccgcgttggaattcgctcttcaacgcgtcggggt 257  Q
    ||||||||| || ||| | |||||  |||||| | ||| || |||||| | |||||||||| ||||||| || ||| ||||||||||| |||| | | ||    
T  36686 catcgttgatcaccgcgttggaatatgctcttaaccgcgccggagttgcatcaccgttgttaatcaccgtgtcgga-ttcgctcttcatcgcgccagtgt 36588  T
Q  258 cgctgtcagaagcttct 274  Q
    |||||| ||||||||||    
T  36587 cgctgttagaagcttct 36571  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 175 - 274
Target Start/End: Original strand, 27444516 - 27444614
Alignment:
Q  175 tcggaattcgctcttcatcgcaccagagttgaaccaccgttgttgatcaccgcgttggaattcgctcttcaacgcgtcggggtcgctgtcagaagcttct 274  Q
    |||||||  |||||| | ||| || ||||||||||||||||||| |||||||||| || |||||||||| | |||  | | |||||||| ||||||||||    
T  27444516 tcggaatatgctcttaaccgcgccggagttgaaccaccgttgttaatcaccgcgtcgg-attcgctctttatcgcaccagtgtcgctgttagaagcttct 27444614  T

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