View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4111_low_41 (Length: 253)
Name: NF4111_low_41
Description: NF4111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4111_low_41 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 6 - 253
Target Start/End: Original strand, 46853289 - 46853545
Alignment:
| Q |
6 |
aggagcacagaacaaggcattgtgtgacatggctttgcataagacaaaattattgtgtgacatatggnnnnnnnn-cctataatataagaccatgattag |
104 |
Q |
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|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
46853289 |
aggaacacaaaacaaggcattgtgtgacatggctttgcataagacaaaattattgtgtgacatatggtttttttttcctataatataagaccatgattag |
46853388 |
T |
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| Q |
105 |
agcaaact--------ccaagagttaatgtgatacatagacttctcgggtaaaaggatagggaaaactacactgaattggataagagaaattaaagggga |
196 |
Q |
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||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46853389 |
agctaactcttgaactccaagagttaatgtgatacatagacttctcgggtaaaaggatagggaaaactacactgaattggataagagaaattaaagggga |
46853488 |
T |
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| Q |
197 |
gactctaaagtccagaaatttggtgtgtatcttcacaggtaatctttgctacatcac |
253 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46853489 |
gactctaaagtccagaaatttggtgtgtatcttcacaggtaatctttgctacatcac |
46853545 |
T |
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