View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4111_low_42 (Length: 253)
Name: NF4111_low_42
Description: NF4111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4111_low_42 |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 19 - 242
Target Start/End: Original strand, 37384350 - 37384573
Alignment:
| Q |
19 |
aaggcaagcatcccattggaggtaaacctcctagggatattttcttagcaccaagatcataaagtttgtggatgaaattttgagctattccagcaagaaa |
118 |
Q |
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| T |
37384350 |
aaggcaagcatcccattggaggtaaacctcctagggatattttcttagcaccaagatcataaagtttgtggatgaaattttgagctattccagcaagaaa |
37384449 |
T |
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| Q |
119 |
attttgatactcactaggtgtgtattgagatgccctgccaggaattgtataataattctctagaaagtcgtttgttcctagacttattatgtacaatgct |
218 |
Q |
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| T |
37384450 |
attttgatactcactaggtgtgtattgagatgccctgccaggaattgtataataattctctagaaagtcgtttgttcctagacttattatgtacaatgct |
37384549 |
T |
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| Q |
219 |
tttgtaattgtctcttttgccttt |
242 |
Q |
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|||||||||||||||||||||||| |
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| T |
37384550 |
tttgtaattgtctcttttgccttt |
37384573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 21 - 196
Target Start/End: Complemental strand, 36600681 - 36600506
Alignment:
| Q |
21 |
ggcaagcatcccattggaggtaaacctcctagggatattttcttagcaccaagatcataaagtttgtggatgaaattttgagctattccagcaagaaaat |
120 |
Q |
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||||||||||||||||||||||| |||||||| || || ||| ||||||||||| |||| || || |||||||| | ||||||||||||||||||| |
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| T |
36600681 |
ggcaagcatcccattggaggtaaccctcctagagaaatcttcctagcaccaagagcatatagattccttatgaaattctcagctattccagcaagaaaag |
36600582 |
T |
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| Q |
121 |
tttgatactcactaggtgtgtattgagatgccctgccaggaattgtataataattctctagaaagtcgtttgttcc |
196 |
Q |
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|||| |||| |||||||||||| |||||||| || || || ||||| ||||||||||| || ||||||||||| |
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| T |
36600581 |
tttggtactgttgaggtgtgtattgtgatgcccttcctggcatggtatagtaattctctaggaaatcgtttgttcc |
36600506 |
T |
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