View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4111_low_43 (Length: 252)
Name: NF4111_low_43
Description: NF4111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4111_low_43 |
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Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 20691935 - 20692174
Alignment:
| Q |
1 |
cctactgatgaccaacttattctcagaggtttctctattacttccctgtgcagttgcagtaaggaagcgcaagaaacatctcttcacttgtttctacatt |
100 |
Q |
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| T |
20691935 |
cctactgatgaccaacttaatctcagaggtttctctattacttccatgtgcagttgttgtaaagaagcgcaagaaacatctcttcacttgtttctacatt |
20692034 |
T |
|
| Q |
101 |
gtaaatatgcttcaagactttggtcttggccatctaatgtcctccaaatgaatcttcaaatccaatcctttgaggatatttggcatattgctgacagggg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
20692035 |
gtaaatatgcttcaagactttggtcttggccatctaatgtcctccaaatgaatcttcaaatccaatcctttgaggatatttggcatattgctgacatggg |
20692134 |
T |
|
| Q |
201 |
gtggtctcctcaatgcaaggttgtcatccaagcatctctg |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
20692135 |
gtggtctcctcaatgcaaggttgtcatccaagcatctctg |
20692174 |
T |
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