View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4111_low_45 (Length: 250)
Name: NF4111_low_45
Description: NF4111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4111_low_45 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 5545964 - 5546206
Alignment:
| Q |
1 |
tactttcaaataatttaaaagcacaagcatgcaaagttcgattgaattgagtatcaatggctctatctacacgaagccgacaaataacttcacacaagaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5545964 |
tactttcaaataatttaaaagcacaagcatgcaaagttcgattgaattgagtatcaatggctctatctacacgaagccgacaaataacttcacacaagaa |
5546063 |
T |
|
| Q |
101 |
acatggacaactattgatgattaattaaaaaaggtgagaataaatattgtagtcaaataaaattatacgtttacattccaacacaactaataa---nnnn |
197 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||| |
|
|
| T |
5546064 |
acatggacaactgttgatgattaattaaaaaaggtgagaataaatattgtagtcaaataaaattacatgtttacattccaacataactaataattttttt |
5546163 |
T |
|
| Q |
198 |
nnnatatccgacgttatttctctctctagctcccccctctctg |
240 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
5546164 |
tttatatccgatgttatttctctctctagctcccccctctctg |
5546206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 49 - 134
Target Start/End: Original strand, 5545279 - 5545367
Alignment:
| Q |
49 |
gagtatcaatggctctatctacacgaagccgacaaataacttc---acacaagaaacatggacaactattgatgattaattaaaaaagg |
134 |
Q |
| |
|
|||||||||||||| ||| | || ||| |||| |||||||||| ||||||||||||||||||||| |||| |||||||||||||||| |
|
|
| T |
5545279 |
gagtatcaatggctttatgtgcatgaatccgataaataacttctgcacacaagaaacatggacaactgttgaagattaattaaaaaagg |
5545367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University