View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4111_low_49 (Length: 237)
Name: NF4111_low_49
Description: NF4111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4111_low_49 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 46853668 - 46853855
Alignment:
| Q |
1 |
aatttacattactcttcttccatgatgtcttaccagccattttgggtttaaaaaagttggattcatatgggatattaagtaaatactaattatgtgtttt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||| || ||||||||||||||||| |
|
|
| T |
46853668 |
aatttacattactcttcttccatgatgtcttaccaaccattttgggtttaaaagagttagattcatatgggatattaagcaagtactaattatgtgtttt |
46853767 |
T |
|
| Q |
101 |
gatggcatggttgttattcattatttctttatgcgcaaacaattccatattatcgtctatatacctcaggttaaatcacgtacaatat |
188 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
46853768 |
gatgacatggttgttattcattatttctttatgcgcaaacaattccatattatcgtctatataccttaggttaaatcacacacaatat |
46853855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University