View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4111_low_5 (Length: 609)
Name: NF4111_low_5
Description: NF4111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4111_low_5 |
 | |
|
| [»] scaffold0002 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-128; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 12866550 - 12866810
Alignment:
| Q |
1 |
tccattatctatcatcaagatatgaaccatattgtagctatttccttgcttggtaacatacgtcattattgaatggctgaagcccatctttgtatgaacc |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
12866550 |
tccattatctgtcatcaagatatgaaccatattgtagctatttccttgcttggtaacatacgtcattattgattggctgaagcccatctttgtatgaacc |
12866649 |
T |
|
| Q |
101 |
ttattaaggaagagtgatgatgataaaaagctagtagtactattgtacaaaaagctattgctctttgcacaagtaataatgtttaactttttccactcc- |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12866650 |
ttattaaggaagagtgatgatgataaaaagctagtagtactattgtacaaaaagctattgctctttgcacaagtaataatgtttaactttttccactcct |
12866749 |
T |
|
| Q |
200 |
----tcgtgcattgtttataagtcatgggacaatcctaacactttttcattctaccttcag |
256 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12866750 |
cgtgtcgtgcattgtttataagtcatgggacaatcctaacactttttcattctaccttcag |
12866810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 347 - 508
Target Start/End: Original strand, 12866906 - 12867067
Alignment:
| Q |
347 |
accttttgtaggggaaaattatacccttttgttttaatcgaaaaatatgtatcaaattaaaagaaacagattgatacaaagagtacaagagaacctttnn |
446 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
12866906 |
accttttgtaggggaaaattatacccttttgttttaatcgaaaaatatgtatcaaattaaaagaaacagattgatacaaagagtacaagagtacctttaa |
12867005 |
T |
|
| Q |
447 |
nnnnnntgagtgcaagagtactaagaaaccaaacaataaaccgaataataaaaactaggtat |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12867006 |
aaaaaatgagtgcaagagtactaagaaaccaaacaataaaccgaataataaaaactaggtat |
12867067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 66; Significance: 7e-29; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 506 - 594
Target Start/End: Original strand, 138318 - 138413
Alignment:
| Q |
506 |
tatatcgaaagtaaggagcaataatctatcgtgggtaaagatac-------gatatgttaactttgatacgcaatgctgacatgaatcgaaaaaga |
594 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
138318 |
tatatcgaaagtaaggagcaataatctatcgtgggtaaagatactatcgctgatatgctaactttgatacgcaatgctgacatgaatcgaaaaaga |
138413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 7e-29; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 506 - 594
Target Start/End: Complemental strand, 18342039 - 18341944
Alignment:
| Q |
506 |
tatatcgaaagtaaggagcaataatctatcgtgggtaaagatac-------gatatgttaactttgatacgcaatgctgacatgaatcgaaaaaga |
594 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18342039 |
tatatcgaaagtaaggagcaataatctatcgtgggtaaagatactatcgctgatatgctaactttgatacgcaatgctgacatgaatcgaaaaaga |
18341944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 506 - 594
Target Start/End: Complemental strand, 22101316 - 22101220
Alignment:
| Q |
506 |
tatatcgaaagtaaggagcaataatctatcgtgggtaaagata-------cgatatgttaactttgatacgc-aatgctgacatgaatcgaaaaaga |
594 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
22101316 |
tataccgaaagtaaggagcaataatctatcgtgggtaaagatactatcgtcgatatgataactttgatacgcaaatgctgacatgaatcgaaaaaga |
22101220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 7e-29; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 506 - 594
Target Start/End: Complemental strand, 13168670 - 13168575
Alignment:
| Q |
506 |
tatatcgaaagtaaggagcaataatctatcgtgggtaaagatac-------gatatgttaactttgatacgcaatgctgacatgaatcgaaaaaga |
594 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13168670 |
tatatcgaaagtaaggagcaataatctatcgtgggtaaagatactatcgctgatatgctaactttgatacgcaatgctgacatgaatcgaaaaaga |
13168575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University