View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4111_low_50 (Length: 227)
Name: NF4111_low_50
Description: NF4111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4111_low_50 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 45566821 - 45566595
Alignment:
| Q |
1 |
tcatcatgaatccaatcacaaccagccaactctaccgctttcacctaggcaagcttcctactgggggaatgttgtggtcctattttgggcatcaattgta |
100 |
Q |
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| T |
45566821 |
tcatcatgaatccaatcacaaccagccaactctactgctttcacctaggcaagcttcctactgggggaatgttgtggtcctattttgggcatcaattgta |
45566722 |
T |
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| Q |
101 |
tcatttgtatgtcttttgtttaaaatcttatagataattgaattttagtcccgtgataggcgctagcatctcaacctcagattccccttttattagagtg |
200 |
Q |
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| T |
45566721 |
tcatttgtatgtcttttgtttaaaatgttatagataattgaattttagtcccgtgataggcgctagcatctcaacctcagattccccatttattagagtg |
45566622 |
T |
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| Q |
201 |
aattttcggtcaatatgctagttgata |
227 |
Q |
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| T |
45566621 |
aattttcggtcaatatgctagttgata |
45566595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 5 - 227
Target Start/End: Original strand, 35817748 - 35817970
Alignment:
| Q |
5 |
catgaatccaatcacaaccagccaactctaccgctttcacctaggcaagcttcctactgg-gggaatgttgtggtcctattttgggcatcaattgtatca |
103 |
Q |
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| T |
35817748 |
catgaatccaatcacaaccagccaactttactgcttt-acccaggcaagcttcctccttatgggaatgttgaggtcctattttgggtatcaattgtatca |
35817846 |
T |
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| Q |
104 |
tttgtatgtcttttgtttaaaatcttatagataattgaattttagtcccgtgataggcgctagcatctcaacctcagattccccttttattagagtgaat |
203 |
Q |
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| T |
35817847 |
tttgtacgtgttctgtttaaaatctaatagatgattgaattttaatctcgtgataggcgctagcatttcaacctcaggttccccatttattagggtgcat |
35817946 |
T |
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| Q |
204 |
tttcggtcaatatgctagttgata |
227 |
Q |
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| T |
35817947 |
tttcggtcaatatgccacttgata |
35817970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 45084403 - 45084355
Alignment:
| Q |
5 |
catgaatccaatcacaaccagccaactctaccgctttcacctaggcaag |
53 |
Q |
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||||||||||||||||||||||||||||||| ||||| |||||| |||| |
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| T |
45084403 |
catgaatccaatcacaaccagccaactctactgcttttacctagccaag |
45084355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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