View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4111_low_53 (Length: 225)
Name: NF4111_low_53
Description: NF4111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4111_low_53 |
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Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 45509517 - 45509721
Alignment:
| Q |
1 |
tataagtatcacatagaagcacatatttgctcatattggttgacacagcatacttattataaagcattcacttttttaatataaaatcccataacgtcct |
100 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45509517 |
tataagtatcacgtagaagcacatatttgctcatattggttgacacagcatacttattataaagcattcacttttttaatataaaatcccataacgtcct |
45509616 |
T |
|
| Q |
101 |
tcatgttgtatgctcctgtttaacgttttgttcacataagacgactcaaaaagtaaaaatgcaaggaatgaatacttaacaacacgcaagacggcaatga |
200 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
45509617 |
tcatgttgtatgctcctgtttaacg-tttgttcacataagacgactcaaaaagtaaaaatggaaggaatgaatacttaacaacacgcaagacggcaatga |
45509715 |
T |
|
| Q |
201 |
tagcat |
206 |
Q |
| |
|
|||||| |
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| T |
45509716 |
tagcat |
45509721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 19844841 - 19844636
Alignment:
| Q |
1 |
tataagtatcacatagaagcacatatttgctcatattggttgacacagcatacttattataaagcattcactttttt-aatataaaatcccataacgtcc |
99 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |
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| T |
19844841 |
tataagtatcacgtagaagcacaaatttgctcatattggtcgacacagcatacttattataaagcattcactttttttaatataaaatcctataacgtcc |
19844742 |
T |
|
| Q |
100 |
ttcatgttgtatgctcctgtttaacgttttgttcacataagacgactcaaaaagtaaaaatgcaaggaatgaatacttaacaacacgcaagacggcaatg |
199 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |
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| T |
19844741 |
ttcatgttgtatgctcctgtttaacgttta-ttcacataagacgactcaaaaagtaaaaatggaaggaatggatacttaacaacacgcaagacggcaatg |
19844643 |
T |
|
| Q |
200 |
atagcat |
206 |
Q |
| |
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||||||| |
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|
| T |
19844642 |
atagcat |
19844636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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