View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4111_low_54 (Length: 223)

Name: NF4111_low_54
Description: NF4111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4111_low_54
NF4111_low_54
[»] chr4 (8 HSPs)
chr4 (21-215)||(14173939-14174129)
chr4 (21-215)||(14178693-14178883)
chr4 (21-215)||(28606979-28607169)
chr4 (21-215)||(28611741-28611931)
chr4 (71-215)||(44161588-44161732)
chr4 (71-209)||(11104477-11104615)
chr4 (71-155)||(48826916-48827000)
chr4 (18-56)||(11104625-11104663)
[»] chr8 (2 HSPs)
chr8 (21-215)||(12930678-12930868)
chr8 (21-215)||(12935424-12935614)
[»] chr1 (1 HSPs)
chr1 (21-215)||(34907141-34907331)
[»] chr7 (6 HSPs)
chr7 (71-215)||(37040645-37040789)
chr7 (71-206)||(15290243-15290374)
chr7 (71-211)||(12082021-12082160)
chr7 (21-156)||(12099060-12099191)
chr7 (21-56)||(15290385-15290420)
chr7 (21-56)||(37040599-37040634)
[»] chr5 (3 HSPs)
chr5 (73-209)||(42911210-42911346)
chr5 (21-201)||(29107048-29107224)
chr5 (21-56)||(42911162-42911197)
[»] chr3 (1 HSPs)
chr3 (72-210)||(51302168-51302306)
[»] chr2 (1 HSPs)
chr2 (81-215)||(8539185-8539318)
[»] chr6 (1 HSPs)
chr6 (26-56)||(2100723-2100753)


Alignment Details
Target: chr4 (Bit Score: 140; Significance: 2e-73; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 21 - 215
Target Start/End: Complemental strand, 14174129 - 14173939
Alignment:
Q  21 atattaaagaatattacaatattctctccactctctnnnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgcta 120  Q
    ||||||||||||||||||||||||||||||||||||              ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14174129 atattaaagaatattacaatattctctccactctctcacacacaca----agagatacaatatagtgtttcccgtgagacctacttctattctaatgcta 14174034  T
Q  121 ttatattatagcacctagaagttatagagatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctc 215  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  14174033 ttattttatagcacctagaagttatagagatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcctctc 14173939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 21 - 215
Target Start/End: Complemental strand, 14178883 - 14178693
Alignment:
Q  21 atattaaagaatattacaatattctctccactctctnnnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgcta 120  Q
    ||||||||||||||||||||||||||||||||||||              ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14178883 atattaaagaatattacaatattctctccactctctcacacacaca----agagatacaatatagtgtttcccgtgagacctacttctattctaatgcta 14178788  T
Q  121 ttatattatagcacctagaagttatagagatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctc 215  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  14178787 ttattttatagcacctagaagttatagagatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcctctc 14178693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 21 - 215
Target Start/End: Original strand, 28606979 - 28607169
Alignment:
Q  21 atattaaagaatattacaatattctctccactctctnnnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgcta 120  Q
    ||||||||||||||||||||||||||||||||||||              ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28606979 atattaaagaatattacaatattctctccactctctcacacacaca----agagatacaatatagtgtttcccgtgagacctacttctattctaatgcta 28607074  T
Q  121 ttatattatagcacctagaagttatagagatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctc 215  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  28607075 ttattttatagcacctagaagttatagagatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcctctc 28607169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 21 - 215
Target Start/End: Original strand, 28611741 - 28611931
Alignment:
Q  21 atattaaagaatattacaatattctctccactctctnnnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgcta 120  Q
    ||||||||||||||||||||||||||||||||||||              ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28611741 atattaaagaatattacaatattctctccactctctcacacacaca----agagatacaatatagtgtttcccgtgagacctacttctattctaatgcta 28611836  T
Q  121 ttatattatagcacctagaagttatagagatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctc 215  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  28611837 ttattttatagcacctagaagttatagagatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcctctc 28611931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 71 - 215
Target Start/End: Complemental strand, 44161732 - 44161588
Alignment:
Q  71 agagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagatgatacccacccggtgtatt 170  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  44161732 agagatacaatatagtgtttcccgtaagacctacttctattctaatgctattattttatagcacctagaagttatagagatgatacccacccggtgtatt 44161633  T
Q  171 tttcccacactctctggatttactcaacactctatttttcttctc 215  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||    
T  44161632 tttcccacactctctggatttactcaacactctattattcctctc 44161588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 71 - 209
Target Start/End: Complemental strand, 11104615 - 11104477
Alignment:
Q  71 agagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagatgatacccacccggtgtatt 170  Q
    ||||||||||||||||||||||||||||||| ||| |||||| ||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||    
T  11104615 agagatacaatatagtgtttcccgtgagacccactcctattcaaatgctattattttataacacctagaagttatagagatgatatccacccggtgtatt 11104516  T
Q  171 tttcccacactctctggatttactcaacactctattttt 209  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  11104515 tttcctacactctctggatttactcaacactctattttt 11104477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 71 - 155
Target Start/End: Original strand, 48826916 - 48827000
Alignment:
Q  71 agagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagatgata 155  Q
    |||||||||||||||||||||||||||||   ||| |||||  ||||||||||| ||||||||||||||||||||||||||||||    
T  48826916 agagatacaatatagtgtttcccgtgagattcactcctatttgaatgctattattttatagcacctagaagttatagagatgata 48827000  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 11104663 - 11104625
Alignment:
Q  18 accatattaaagaatattacaatattctctccactctct 56  Q
    |||||||  ||||||||||||||||||||||||||||||    
T  11104663 accatatctaagaatattacaatattctctccactctct 11104625  T

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Target: chr8 (Bit Score: 136; Significance: 4e-71; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 21 - 215
Target Start/End: Complemental strand, 12930868 - 12930678
Alignment:
Q  21 atattaaagaatattacaatattctctccactctctnnnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgcta 120  Q
    ||||||||||||||||||||||||||||||||||||              |||||||||||||||||||||||||||||||||||| |||||||||||||    
T  12930868 atattaaagaatattacaatattctctccactctctcacacacaca----agagatacaatatagtgtttcccgtgagacctacttttattctaatgcta 12930773  T
Q  121 ttatattatagcacctagaagttatagagatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctc 215  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  12930772 ttattttatagcacctagaagttatagagatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcctctc 12930678  T

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Target: chr8; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 21 - 215
Target Start/End: Complemental strand, 12935614 - 12935424
Alignment:
Q  21 atattaaagaatattacaatattctctccactctctnnnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgcta 120  Q
    ||||||||||||||||||||||||||||||||||||              |||||||||||||||||||||||||||||||||||| || ||||||||||    
T  12935614 atattaaagaatattacaatattctctccactctctcacacacaca----agagatacaatatagtgtttcccgtgagacctacttttactctaatgcta 12935519  T
Q  121 ttatattatagcacctagaagttatagagatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctc 215  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  12935518 ttattttatagcacctagaagttatagagatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcctctc 12935424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 136; Significance: 4e-71; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 21 - 215
Target Start/End: Complemental strand, 34907331 - 34907141
Alignment:
Q  21 atattaaagaatattacaatattctctccactctctnnnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgcta 120  Q
    ||||||||||||||||||||||||||||||||||||              |||||||||||||||||||||||||||||||||||| |||||||||||||    
T  34907331 atattaaagaatattacaatattctctccactctctcacacacaca----agagatacaatatagtgtttcccgtgagacctacttttattctaatgcta 34907236  T
Q  121 ttatattatagcacctagaagttatagagatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctc 215  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  34907235 ttattttatagcacctagaagttatagagatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcctctc 34907141  T

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Target: chr7 (Bit Score: 129; Significance: 6e-67; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 71 - 215
Target Start/End: Original strand, 37040645 - 37040789
Alignment:
Q  71 agagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagatgatacccacccggtgtatt 170  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||    
T  37040645 agagatacaatatagtgttttccgtgagacctacttctattctaatgctattattttatagcacctagaagttatagagatgatacccacccgatgtatt 37040744  T
Q  171 tttcccacactctctggatttactcaacactctatttttcttctc 215  Q
    |||||||||||||||||||||||||||||||||||||||| ||||    
T  37040745 tttcccacactctctggatttactcaacactctatttttcctctc 37040789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 71 - 206
Target Start/End: Complemental strand, 15290374 - 15290243
Alignment:
Q  71 agagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagatgatacccacccggtgtatt 170  Q
    |||||||||||||||||||||| |||||||| ||| |||||| ||||||||||| | |  ||||||||||||||||||||||||||||||||||||||||    
T  15290374 agagatacaatatagtgtttcc-gtgagacccactcctattcgaatgctattatttca--gcacctagaagttatagagatgatacccacccggtgtatt 15290278  T
Q  171 tttcccacactctctggatttactcaacactctatt 206  Q
    ||| ||||||| |||||||||| |||||||||||||    
T  15290277 ttt-ccacactttctggatttagtcaacactctatt 15290243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 71 - 211
Target Start/End: Complemental strand, 12082160 - 12082021
Alignment:
Q  71 agagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagatgatacccacccggtgtatt 170  Q
    |||||||||||||||||||||   ||||||   || |||||| |||| |||||| ||||||| |||||||||||||||||| ||||| ||||| | ||||    
T  12082160 agagatacaatatagtgtttctaatgagactcgctcctattcaaatgttattattttatagcgcctagaagttatagagataatacctacccgatatatt 12082061  T
Q  171 tttcccacactctctggatttactcaacactctatttttct 211  Q
    |||||| |  | ||||||||||| |||||||||| ||||||    
T  12082060 tttccc-ctttttctggatttacccaacactctaattttct 12082021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 156
Target Start/End: Complemental strand, 12099191 - 12099060
Alignment:
Q  21 atattaaagaatattacaatattctctccactctctnnnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgcta 120  Q
    ||||||||||||||||||||||||||||||||||||              ||||| ||||||| |||||||  |||||||  ||| |||||| |||| ||    
T  12099191 atattaaagaatattacaatattctctccactctcttacacgcaca----agagacacaatattgtgtttctagtgagactcactcctattcaaatgata 12099096  T
Q  121 ttatattatagcacctagaagttatagagatgatac 156  Q
    |||| ||||| |||||| ||||||||||||||||||    
T  12099095 ttattttataacacctaaaagttatagagatgatac 12099060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 56
Target Start/End: Complemental strand, 15290420 - 15290385
Alignment:
Q  21 atattaaagaatattacaatattctctccactctct 56  Q
    ||||| ||||||||||||||||||||||||||||||    
T  15290420 atatttaagaatattacaatattctctccactctct 15290385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 56
Target Start/End: Original strand, 37040599 - 37040634
Alignment:
Q  21 atattaaagaatattacaatattctctccactctct 56  Q
    ||||||||||||||||||||||| ||||||||||||    
T  37040599 atattaaagaatattacaatattttctccactctct 37040634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 117; Significance: 9e-60; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 73 - 209
Target Start/End: Original strand, 42911210 - 42911346
Alignment:
Q  73 agatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagatgatacccacccggtgtatttt 172  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |||||||||    
T  42911210 agatacaatatagtgtttcccttgagacctacttctattctaatgctattattttatagcaccaagaagttatagagatgatacccacccagtgtatttt 42911309  T
Q  173 tcccacactctctggatttactcaacactctattttt 209  Q
    | |||||||||||||||||||||||||||||||||||    
T  42911310 ttccacactctctggatttactcaacactctattttt 42911346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 21 - 201
Target Start/End: Original strand, 29107048 - 29107224
Alignment:
Q  21 atattaaagaatattacaatattctctccactctctnnnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgcta 120  Q
    ||||||||||||||||||||||||||||||||||||              |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  29107048 atattaaagaatattacaatattctctccactctcttacacacaca----agagatacaa-atagtgtttcccgtgagacctacttctattctaatgcta 29107142  T
Q  121 ttatattatagcacctagaagttatagagatgata-cccacccggtgtatttttcccacactctctggatttactcaacact 201  Q
    |||| || |||||||||||||||||| |||||||| |||||||  |||||||||||||||||||||||||||||||||||||    
T  29107143 ttattttttagcacctagaagttataaagatgataccccacccaatgtatttttcccacactctctggatttactcaacact 29107224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 56
Target Start/End: Original strand, 42911162 - 42911197
Alignment:
Q  21 atattaaagaatattacaatattctctccactctct 56  Q
    ||||| ||||||||||||||||||||||||||||||    
T  42911162 atatttaagaatattacaatattctctccactctct 42911197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 72 - 210
Target Start/End: Complemental strand, 51302306 - 51302168
Alignment:
Q  72 gagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagatgatacccacccggtgtattt 171  Q
    |||||||||||||||||||||||||||||| ||| |||||| ||||| ||| | ||||||||||||||||||||||||||||| ||||||||||||||||    
T  51302306 gagatacaatatagtgtttcccgtgagacccactcctattcgaatgcaattgttttatagcacctagaagttatagagatgattcccacccggtgtattt 51302207  T
Q  172 ttcccacactctctggatttactcaacactctatttttc 210  Q
    |  ||||||||||||||||||||||| ||||||||||||    
T  51302206 tatccacactctctggatttactcaatactctatttttc 51302168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 81 - 215
Target Start/End: Complemental strand, 8539318 - 8539185
Alignment:
Q  81 tatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagatgatacccacccggtgtatttttcccacac 180  Q
    |||||||||||| |||||||| ||| |||||| | ||||||||| ||| |||||||| ||||||||||||||||||||| ||| ||||||||||||||||    
T  8539318 tatagtgtttcc-gtgagacccactcctattcgattgctattattttacagcacctaaaagttatagagatgatacccatccgatgtatttttcccacac 8539220  T
Q  181 tctctggatttactcaacactctatttttcttctc 215  Q
    |||||| ||||||| |||||| |||||||| ||||    
T  8539219 tctctgaatttactgaacactatatttttcctctc 8539185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 56
Target Start/End: Original strand, 2100723 - 2100753
Alignment:
Q  26 aaagaatattacaatattctctccactctct 56  Q
    |||||||||||||||||||||||||||||||    
T  2100723 aaagaatattacaatattctctccactctct 2100753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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