View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4111_low_6 (Length: 601)
Name: NF4111_low_6
Description: NF4111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4111_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 562; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 562; E-Value: 0
Query Start/End: Original strand, 17 - 590
Target Start/End: Original strand, 37115748 - 37116321
Alignment:
| Q |
17 |
agtatgatctgcatgtaccattcaatataatacacttcctgagacttaggataattagaagataaaaaatacgagccttataaaaaacaatccttctggt |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
37115748 |
agtatgatctgcatgtaccattcaatataatacacttcctgagacttgggataattaggagataaaaaatacgagccttataaaaaacaatccttctggt |
37115847 |
T |
|
| Q |
117 |
ttatgtttgtcactataatgctaaaagaattttatgtaatgaatcttattgaattaatagaagctcggcaacaaacctaagaatactgccatcaaagctc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37115848 |
ttatgtttgtcactataatgctaaaagaattttatgtaatgaatcttattgaattaatagaagctcggcaacaaacctaagaatactgccatcaaagctc |
37115947 |
T |
|
| Q |
217 |
aacacttcagtttgactgcgctgccgagtagcaagttttaacctctgatggacacttgatgcccctgaaatgggactagaaggatctagaagtggattcc |
316 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37115948 |
aacacttcagtttgactgcgctgccgggtagcaagttttaacctctgatggacacttgatgcccctgaaatgggactagaaggatctagaagtggattcc |
37116047 |
T |
|
| Q |
317 |
accttccactggcatggttctgaagcttcccgaaagactcctttgttggctgtttctggtaaagaagctttgcagtgaaacctgttgattggtactcagc |
416 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37116048 |
accttccactggcatggttctgaagcttcccgaaagactcctttgttggctgtttctggtaaagaagctttgcagtgaaacctgttgattggtactcagc |
37116147 |
T |
|
| Q |
417 |
acaaatgtcatgcaacttcttccttaagttttgcatcgcatcttggtgtccaacaaatgacccagactgaagcatctccgatgaaactatccttctacat |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37116148 |
acaaatgtcatgcaacttcttccttaagttttgcatcgcatcttggtgtccaacaaatgacccagactgaagcatctccgatgaaactatccttctacat |
37116247 |
T |
|
| Q |
517 |
atattactgcacaaggttggactaaatagtggcatcccaaattccaagctcaacggaacccattcatacttcat |
590 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37116248 |
atattactgcacaaggttggactaaatagtggcatcccaaattccaagctcaacggaacccattcatacttcat |
37116321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 187 - 588
Target Start/End: Complemental strand, 36250958 - 36250557
Alignment:
| Q |
187 |
acaaacctaagaatactgccatcaaagctcaacacttcagtttgactgcgctgccgagtagcaagttttaacctctgatggacacttgatgcccctgaaa |
286 |
Q |
| |
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||||||||||||||||||||||||||||| || ||||||||| || ||| | ||| | |||||||||||||| ||||| ||||||||| |||||||| |
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| T |
36250958 |
acaaacctaagaatactgccatcaaagcttaaaacttcagttctacagcgttctcgatttgcaagttttaacctttgatgctcacttgatgtccctgaaa |
36250859 |
T |
|
| Q |
287 |
tgggactagaaggatctagaagtggattccaccttccactggcatggttctgaagcttcccgaaagactcctttgttggctgtttctggtaaagaagctt |
386 |
Q |
| |
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||||| ||||| || | | ||||||||| |||||||| |||| |||| ||| | | |||| || || | ||| ||||||||||| | ||| |
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| T |
36250858 |
tgggagaggaagggtccactaatggattccatcttccactagcatagttcataagttgtcgtgaagattctttaacttgctccttctggtaaagtacctt |
36250759 |
T |
|
| Q |
387 |
tgcagtgaaacctgttgattggtactcagcacaaatgtcatgcaacttcttccttaagttttgcatcgcatcttggtgtccaacaaatgacccagactga |
486 |
Q |
| |
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|||| |||||||| ||||||||| ||| |||||||||| | || ||| ||||| ||||||| ||| |||||| || ||||||| ||||| ||| |
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| T |
36250758 |
agcagcaggacctgttgcttggtactctgcataaatgtcatgtatttttttctttaagctttgcattgcacgatggtgttcatcaaatgatccagattga |
36250659 |
T |
|
| Q |
487 |
agcatctccgatgaaactatccttctacatatattactgcacaaggttggactaaatagtggcatcccaaattccaagctcaacggaacccattcatact |
586 |
Q |
| |
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|||| || |||||||| | |||||||||||||||| | ||||| | || ||||||| |||||||||||| || | |||||||||||||| ||||||| |
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| T |
36250658 |
agcaattcagatgaaaccacccttctacatatattattacacaacttcgggctaaataatggcatcccaaactcaacactcaacggaacccaatcatact |
36250559 |
T |
|
| Q |
587 |
tc |
588 |
Q |
| |
|
|| |
|
|
| T |
36250558 |
tc |
36250557 |
T |
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