View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4111_low_7 (Length: 566)
Name: NF4111_low_7
Description: NF4111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4111_low_7 |
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| [»] scaffold0856 (3 HSPs) |
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Alignment Details
Target: scaffold0856 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: scaffold0856
Description:
Target: scaffold0856; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 322 - 544
Target Start/End: Complemental strand, 3497 - 3275
Alignment:
| Q |
322 |
agcaaatagcatttatatgattaatccagccttcagttttttctatcttgtagaatatattactcctttagttgcccttgaaatgggaagtccgttagtg |
421 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3497 |
agcaaatagcatttatatgattaatccagccttcagttttttctatcttgtagaatatattactcctttagttgcccttgaaatgggaagtccgttagtg |
3398 |
T |
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| Q |
422 |
agtggacttaggaacctcttcattgagtatattatcatatttgaaattgaaagatcccttcttatgaaacaaagtgaaatggagtaagatggtcccagaa |
521 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
3397 |
agtggacttaggaacctcttcattgagtatattatcatatttgaaattgaaagatcccttcttatgaaacaaagtgcaatggagtaagatggtcccagaa |
3298 |
T |
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| Q |
522 |
tcaagttagctgagtcactacca |
544 |
Q |
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| T |
3297 |
taaagttagctgagtcactacca |
3275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0856; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 62 - 281
Target Start/End: Complemental strand, 3710 - 3491
Alignment:
| Q |
62 |
caaccacgaagtttagtcagctaaggaacaagctaggagtagtcaaaccatcctctagcttgagaggggcagttaaggaatgatcatagccagtttgaaa |
161 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3710 |
caaccatgaagtttagtcagctaaggaacaagctaggagtagtcaaaccatcctctagcttgagaggggcagttaaggaatgatcatagccagtttgaaa |
3611 |
T |
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| Q |
162 |
ttgtctccgaccgatagcatgatatcttgatttaaatttgtagattttctaaatctcttatctttcatctgtaattcggaattgtgttatcttatcctaa |
261 |
Q |
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| T |
3610 |
ttgtctccgaccgatagcatgatatcttgatttaaatttgtagattttctaaatctcttatctttcatctgtaattcggaattgtgttatcttatcctaa |
3511 |
T |
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| Q |
262 |
ttattctgtctgtaacaaat |
281 |
Q |
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|||||||||||||| ||||| |
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| T |
3510 |
ttattctgtctgtagcaaat |
3491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0856; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 3796 - 3748
Alignment:
| Q |
18 |
cagagatcagttgttgagtaataacgtgactatagcctatggtccaacc |
66 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
3796 |
cagagatcagttgttgagtaataacgcgactatagcctatggtccaacc |
3748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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