View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4111_low_8 (Length: 548)

Name: NF4111_low_8
Description: NF4111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4111_low_8
NF4111_low_8
[»] chr6 (13 HSPs)
chr6 (291-538)||(28017820-28018060)
chr6 (32-224)||(28017569-28017773)
chr6 (291-535)||(27917175-27917412)
chr6 (263-475)||(28047437-28047640)
chr6 (326-481)||(28074634-28074786)
chr6 (262-486)||(28035542-28035757)
chr6 (310-469)||(28091631-28091784)
chr6 (49-224)||(28035311-28035504)
chr6 (302-376)||(27922091-27922165)
chr6 (469-535)||(28001682-28001748)
chr6 (302-469)||(28018603-28018767)
chr6 (346-410)||(28534354-28534418)
chr6 (43-92)||(27916990-27917039)
[»] chr5 (1 HSPs)
chr5 (303-475)||(1440036-1440205)


Alignment Details
Target: chr6 (Bit Score: 166; Significance: 1e-88; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 291 - 538
Target Start/End: Original strand, 28017820 - 28018060
Alignment:
Q  291 taatatctatcatcaaaaccatgtctctgacatcatgatttggttgttgtgttacgttaggtatgaatcaccttattggagatcacgtgcagcaaagata 390  Q
    |||||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||| |||||||||| ||    
T  28017820 taatatctattatcaaaaccatgtctctgacatcatgatttg-ttgttgtgttatgttaggtatcaatcaccttattggagatcacttgcagcaaaggta 28017918  T
Q  391 attcaggatgcatggagatacatgaagaagtgtctaattcaagctaataataccacacaaaatgattatcaaacattgaggtcattcattcattccttcc 490  Q
    |||||||||||||||||| |||||||||||||||||||||||||   |||| |||||||||||||||||||||||||||||    |||||||||||| ||    
T  28017919 attcaggatgcatggagaaacatgaagaagtgtctaattcaagc---taatgccacacaaaatgattatcaaacattgagg----tcattcattcctccc 28018011  T
Q  491 atttctttgttgtca-ttctgttcatattcagcatgtcttcaccctatg 538  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  28018012 atttctttgttgtcatttctgttgatattcagcatgtcttcaccctatg 28018060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 32 - 224
Target Start/End: Original strand, 28017569 - 28017773
Alignment:
Q  32 taaatgacagatcaccaagatcaataggctcttatatcatcttagaatctagtttacgccttaacccttataaaatc------------gggttgagagg 119  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| ||             | |||||||||    
T  28017569 taaatgacagatcaccaagatcagtaggctcttatatcatcttagaatctggtttacgccttaacccttataatatgcccctcacttatgtgttgagagg 28017668  T
Q  120 taaagagtgaggactacctataccacttatatatgcattgtccgcaactaatatggaactcttaacaatttgtgtatctgatacaaaaccatcatttttc 219  Q
    |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  28017669 taaagagtgaggactacctataccacttatatatacattgtcctcaactaatatggaactcttaacaatttttgtatctgatacaaaaccatcatttttc 28017768  T
Q  220 tatat 224  Q
    |||||    
T  28017769 tatat 28017773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 291 - 535
Target Start/End: Original strand, 27917175 - 27917412
Alignment:
Q  291 taatatctatcatcaaaaccatgtctctgacatcatgatttggttgttgtgttacgttaggtatgaatcaccttattggagatcacgtgcagcaaagata 390  Q
    |||||||| | |||| ||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| | |||||||| || |    
T  27917175 taatatctcttatcataactatgtctctgacatcatgatatggttgttgtgttatgttaggtatgaatcaccttattggagatcccttgcagcaacgaga 27917274  T
Q  391 attcaggatgcatggagatacatgaagaagtgtctaattcaagctaataataccacacaaaatgattatcaaacattgaggtcattcattcattccttcc 490  Q
    ||||||| |||||||||||||| ||||||| ||||||  | |||    |||||||||||||||||||||||||||||||||    |||||||||||||||    
T  27917275 attcaggttgcatggagatacaggaagaagcgtctaaggccagc---aaataccacacaaaatgattatcaaacattgagg----tcattcattccttcc 27917367  T
Q  491 atttctttgttgtcattctgttcatattcagcatgtcttcaccct 535  Q
    ||||| |||||||| ||||||  ||||||||||||||||||||||    
T  27917368 atttccttgttgtctttctgtcgatattcagcatgtcttcaccct 27917412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 263 - 475
Target Start/End: Original strand, 28047437 - 28047640
Alignment:
Q  263 acaagtgtgttatatacatgcctaatagtaatatctatcatcaaaaccatgtctctgacatcatgatttggttgttgtgttacgttaggtatgaatcacc 362  Q
    ||||||||||||| |||||||||||||      ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||    
T  28047437 acaagtgtgttatttacatgcctaata------tctattatcaaaaccatgtctctgacatcatgatttggttgttgtgttatgttaggtatcaatcacc 28047530  T
Q  363 ttattggagatcacgtgcagcaaagataattcaggatgcatggagatacatgaagaagtgtctaattcaagctaataataccacacaaaatgattatcaa 462  Q
    |||||||||||||| ||||||||| | |||||||| ||||||||||  || ||||||| ||||||  | |||   |||||||||||||||| ||||||||    
T  28047531 ttattggagatcacttgcagcaaacagaattcaggttgcatggagaagcaggaagaagcgtctaagacgagc---taataccacacaaaattattatcaa 28047627  T
Q  463 acattgaggtcat 475  Q
    |||||||||||||    
T  28047628 acattgaggtcat 28047640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 326 - 481
Target Start/End: Original strand, 28074634 - 28074786
Alignment:
Q  326 tgatttggttgttgtgttacgttaggtatgaatcaccttattggagatcacgtgcagcaaagataattcaggatgcatggagatacatgaagaagtgtct 425  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||  | ||||||||| | ||||||||||||||||||| ||||||||||||||||    
T  28074634 tgatttggttgttgtgttatgttaggtatgaatcaccttattggagattccttgcagcaaaaagaattcaggatgcatggagaaacatgaagaagtgtct 28074733  T
Q  426 aattcaagctaataataccacacaaaatgattatcaaacattgaggtcattcattc 481  Q
    || ||||||   |||||||||||||||||||||||||||||| |||||||||||||    
T  28074734 aagtcaagc---taataccacacaaaatgattatcaaacattaaggtcattcattc 28074786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 262 - 486
Target Start/End: Original strand, 28035542 - 28035757
Alignment:
Q  262 tacaagtgtgttatatacatgcctaatagtaatatctatcatcaaaaccatgtctctgacatcatgatttggttgttgtgttacgttaggtatgaatcac 361  Q
    |||||||||||||| |||||||||||||      | ||  |||||||||||| |||||||||||||||||||||||||||| | ||||||||| ||||||    
T  28035542 tacaagtgtgttatttacatgcctaata------tatagtatcaaaaccatggctctgacatcatgatttggttgttgtgtcatgttaggtatcaatcac 28035635  T
Q  362 cttattggagatcacgtgcagcaaagataattcaggatgcatggagatacatgaagaagtgtctaattcaagctaataataccacacaaaatgattatca 461  Q
    ||||||||||||||| ||||||||| | |||||||| |||||||||  | | ||||||| |||||| ||||||   |||||||||||||||| |||||||    
T  28035636 cttattggagatcacttgcagcaaacagaattcaggttgcatggagcaataggaagaagcgtctaagtcaagc---taataccacacaaaataattatca 28035732  T
Q  462 aacattgaggtcattcattcattcc 486  Q
    ||||| | |||||||||||| ||||    
T  28035733 aacatcgtggtcattcattccttcc 28035757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 310 - 469
Target Start/End: Original strand, 28091631 - 28091784
Alignment:
Q  310 catgtctctgacatcatgatttggttgttgtgttacgttaggtatgaatcaccttattggagatcacgtgcagcaaagataattcaggatgcatggagat 409  Q
    |||| ||||||||| ||||||||||| |   |||| ||||||||||||||| |||| |||||||||| ||||||||| | ||||| || |||||||||||    
T  28091631 catgactctgacatgatgatttggttat---gttatgttaggtatgaatcaacttactggagatcacttgcagcaaatagaattcgggttgcatggagat 28091727  T
Q  410 acatgaagaagtgtctaattcaagctaataataccacacaaaatgattatcaaacattga 469  Q
    ||| ||||||  |||||| | ||||   ||||||||||||||||||||||||||||||||    
T  28091728 acaggaagaaacgtctaagtaaagc---taataccacacaaaatgattatcaaacattga 28091784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 49 - 224
Target Start/End: Original strand, 28035311 - 28035504
Alignment:
Q  49 agatcaataggctcttatatcatcttagaatctagtttacgc----cttaacccttataaaatcgggttgagaggtaaagagtgaggactaccta----- 139  Q
    |||||| ||||| |||||||||||||||||||| ||| ||||    || |||||||| |||||  ||||||||||| ||||||||||| ||||||         
T  28035311 agatcagtaggcgcttatatcatcttagaatcttgttcacgcccaactcaacccttacaaaatttggttgagaggtgaagagtgaggattacctagtacc 28035410  T
Q  140 taccacttatatatgcattgtc---------cgcaactaatatggaactcttaacaatttgtgtatctgatacaaaaccatcatttttctatat 224  Q
    |||||||||||||| |||||||         | |||  |||||||||||||||||||| ||  ||||||||||||| || ||||||||||||||    
T  28035411 taccacttatatatacattgtcagaccatatctcaatcaatatggaactcttaacaatatgcatatctgatacaaatccgtcatttttctatat 28035504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 302 - 376
Target Start/End: Original strand, 27922091 - 27922165
Alignment:
Q  302 atcaaaaccatgtctctgacatcatgatttggttgttgtgttacgttaggtatgaatcaccttattggagatcac 376  Q
    |||||||||||| ||||||||| |||||||| |  |||||||| |||||||||||||| |||||| ||| |||||    
T  27922091 atcaaaaccatggctctgacataatgatttgatgattgtgttatgttaggtatgaatcgccttatgggaaatcac 27922165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 469 - 535
Target Start/End: Original strand, 28001682 - 28001748
Alignment:
Q  469 aggtcattcattcattccttccatttctttgttgtcattctgttcatattcagcatgtcttcaccct 535  Q
    |||||||| ||| |||||||||||||| ||||| || ||||| | ||||||||||||||||||||||    
T  28001682 aggtcattaatttattccttccatttcattgttctctttctggtgatattcagcatgtcttcaccct 28001748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 302 - 469
Target Start/End: Original strand, 28018603 - 28018767
Alignment:
Q  302 atcaaaaccatgtctctgacatcatgatttg--gttgttgtgttacgttaggtatgaatcaccttattggagatcacgtgcagcaaagataattcaggat 399  Q
    |||||||||||| |||||||||  |||||||  | | |||||||| |||||||||||||| |||||| ||| ||||| |  | |||| | |||||||| |    
T  28018603 atcaaaaccatggctctgacatattgatttgacgatattgtgttatgttaggtatgaatcgccttatgggaaatcacatagaccaaacagaattcaggtt 28018702  T
Q  400 gcatggagatacatgaagaagtgtctaattcaagctaataataccacacaaaatgattatcaaacattga 469  Q
    |||||||||   | ||||||| ||||||  | ||||||||      ||||||||||| ||||||||||||    
T  28018703 gcatggagaagtaggaagaagcgtctaagacgagctaata-----ccacaaaatgatcatcaaacattga 28018767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 346 - 410
Target Start/End: Original strand, 28534354 - 28534418
Alignment:
Q  346 gttaggtatgaatcaccttattggagatcacgtgcagcaaagataattcaggatgcatggagata 410  Q
    ||||||||||||||||||||||||||||| |  |||||||    |||||||| ||||||||||||    
T  28534354 gttaggtatgaatcaccttattggagatccctagcagcaacccgaattcaggttgcatggagata 28534418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 27916990 - 27917039
Alignment:
Q  43 tcaccaagatcaataggctcttatatcatcttagaatctagtttacgcct 92  Q
    ||||| |||||| |||||||||||||||||||||||| | |||| |||||    
T  27916990 tcacctagatcagtaggctcttatatcatcttagaatatggtttgcgcct 27917039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 7e-32; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 303 - 475
Target Start/End: Original strand, 1440036 - 1440205
Alignment:
Q  303 tcaaaaccatgtctctgacatcatgatttggttgttgtgttacgttaggtatgaatcaccttattggagatcacgtgcagcaaagataattcaggatgca 402  Q
    ||||||| ||| ||||| | | |||||||||||||| || || ||||||||||||||  | ||||||||||||| ||||||||| | ||||| || ||||    
T  1440036 tcaaaacaatgactctgtcctaatgatttggttgttatgctatgttaggtatgaatccacatattggagatcacttgcagcaaacagaattcgggttgca 1440135  T
Q  403 tggagatacatgaagaagtgtctaattcaagctaataataccacacaaaatgattatcaaacattgaggtcat 475  Q
    |||||||||| ||||||| |||||| || |||   |||||||| ||||||||||||||||||||||| |||||    
T  1440136 tggagatacaggaagaagcgtctaagtcgagc---taataccagacaaaatgattatcaaacattgatgtcat 1440205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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