View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4111_low_9 (Length: 547)
Name: NF4111_low_9
Description: NF4111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4111_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 423; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 18 - 530
Target Start/End: Original strand, 34085798 - 34086301
Alignment:
| Q |
18 |
aatccaaacaatgttatcaatcaataactcttacaaaagaaaatagtctc--tctctttactgttgatttccgattatggtgatagcgtcttccttcaaa |
115 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
34085798 |
aatccaaacaatgttatcaat----aactcttacaaaagaaaatagtctctctctctttactgttgatttccgattatggtgataccgtcttccttcaaa |
34085893 |
T |
|
| Q |
116 |
aaatttggtttgtctcattctttttgcttaaattgttcttctaatttgtcttttatagacagtagaagatgtattgtgtccagagatccagaatcctttg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34085894 |
aaatttggtttgtctcattctttttgcttaaattgttcttctaatttgtcttttatagacagtagaagatgtattgtgtccagagatccagaatcctttg |
34085993 |
T |
|
| Q |
216 |
tcttctattggtcgatatccgacaggaaattcaannnnnnngtttatttgtggtgggtgttgtcagtggtaaatagtaggtttgtttcaatcttttaggg |
315 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34085994 |
tcttctattggtcgatatccgacaggaaattcaatttttttgtttatttgt----ggtgttgtcagtggtaaatagtaggtttgtttcaatcttttaggg |
34086089 |
T |
|
| Q |
316 |
attttgtggattcatcgcagatatcgtcgaagggagggtataattttacttgcaatctctattttactcctttggtttgaggactagataagaaggatgt |
415 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |
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| T |
34086090 |
attttgtggattcatcgcagttatcgtcgaagggagggtataattttacttgcaatctctattttacccctttggtttgaggactagat---aaggatgt |
34086186 |
T |
|
| Q |
416 |
gtttgtgattcgagtggagcaggtttcaatttgtcattggaaaaatccttaaattgtttgttgtctgagaaaattgatgcataatggccctggccttggc |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34086187 |
gtttgtgattcgagtggagcaggtttcaatttgtcattggaaaaatccttaaattgtttgttgtctgagaaaattgatgcataatggccctggccttggc |
34086286 |
T |
|
| Q |
516 |
aacaggaccgtttgt |
530 |
Q |
| |
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||||||||||||||| |
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| T |
34086287 |
aacaggaccgtttgt |
34086301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 36 - 72
Target Start/End: Complemental strand, 1752837 - 1752801
Alignment:
| Q |
36 |
aatcaataactcttacaaaagaaaatagtctctctct |
72 |
Q |
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||||||||| |||||||||||| |||||||||||||| |
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| T |
1752837 |
aatcaataaatcttacaaaagagaatagtctctctct |
1752801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 287 - 460
Target Start/End: Original strand, 39076944 - 39077114
Alignment:
| Q |
287 |
aatagtaggtttgtttcaatcttttagggattttgtggattcatcgcagatatcgtcgaagggagggtataattttacttgcaatctctattttactcct |
386 |
Q |
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||||||||||||||||||| |||||| ||||| |||||||||||||||| || || | || || || |||||||||| ||||||||| ||| ||| |
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| T |
39076944 |
aatagtaggtttgtttcaaacttttaaagatttggtggattcatcgcagaaattttctagggtagtgtgtaattttactcaatatctctattctacccct |
39077043 |
T |
|
| Q |
387 |
ttggtttgaggactagataagaaggatgtgtttgtgattcgagtggagcaggtttcaatttgtcattggaaaaa |
460 |
Q |
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|| ||||||||||| || |||||||||||||||||| ||| |||||||||||| || ||| |||| ||||| |
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| T |
39077044 |
ctgttttgaggactatat---aaggatgtgtttgtgatttgagcggagcaggtttccatctgtgattgaaaaaa |
39077114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 48 - 112
Target Start/End: Original strand, 39076690 - 39076754
Alignment:
| Q |
48 |
ttacaaaagaaaatagtctctctctttactgttgatttccgattatggtgatagcgtcttccttc |
112 |
Q |
| |
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|||||| ||| |||||||||||||||||||||||| || | || ||||||||||| |||||||| |
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| T |
39076690 |
ttacaagagagaatagtctctctctttactgttgaatttcatttttggtgatagcgccttccttc |
39076754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 122 - 169
Target Start/End: Original strand, 39076779 - 39076825
Alignment:
| Q |
122 |
ggtttgtctcattctttttgcttaaattgttcttctaatttgtctttt |
169 |
Q |
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|||||||||||||||||||||||||| | |||||||||||||||||| |
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| T |
39076779 |
ggtttgtctcattctttttgcttaaa-gggtcttctaatttgtctttt |
39076825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 480 - 528
Target Start/End: Complemental strand, 13818875 - 13818827
Alignment:
| Q |
480 |
ctgagaaaattgatgcataatggccctggccttggcaacaggaccgttt |
528 |
Q |
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|||||||||||||||||||||||| ||||||||||||||| |||||||| |
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| T |
13818875 |
ctgagaaaattgatgcataatggcactggccttggcaacaagaccgttt |
13818827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 40 - 80
Target Start/End: Original strand, 43414221 - 43414261
Alignment:
| Q |
40 |
aataactcttacaaaagaaaatagtctctctctttactgtt |
80 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
43414221 |
aataactcttacaaaagaaaatagtctctctctttactgtt |
43414261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 36 - 87
Target Start/End: Original strand, 2317036 - 2317088
Alignment:
| Q |
36 |
aatcaataactcttacaaaagaa-aatagtctctctctttactgttgatttcc |
87 |
Q |
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|||||||||||||||||| |||| |||||||||||||||||| ||||| |||| |
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| T |
2317036 |
aatcaataactcttacaagagaagaatagtctctctctttacggttgaattcc |
2317088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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