View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4112_high_12 (Length: 247)
Name: NF4112_high_12
Description: NF4112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4112_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 41110465 - 41110224
Alignment:
| Q |
1 |
gactaagtcatcatccaatgtccaaaacaagtagtttgtttgaagaaaaagaatctcacggaagggcagcttaattgccatacagccagccctatcgaaa |
100 |
Q |
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| T |
41110465 |
gactaagtcatcatccaatgtccaaaacaagtagtttgtttgaagaaaaagaatctcacggaagggcagcttaattgccatacagccagccctatcgaaa |
41110366 |
T |
|
| Q |
101 |
tatctagaaccaaagtatttataagtaannnnnnnaaaataccgtattttttccttctttctgaaatacggtattattttgtacgctaaaatacagtact |
200 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41110365 |
tatctagaaccaaagtatttataagtaatttttttaaaataccgtattttttccttctttctgaaatacggtattattttgtacgctaaaatacagtact |
41110266 |
T |
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| Q |
201 |
ctttaacaacacatcatcgttagttagattggaccctatgct |
242 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
41110265 |
ctttaacaacacatcatcgttagttagattggaccctatgct |
41110224 |
T |
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