View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4112_high_3 (Length: 457)
Name: NF4112_high_3
Description: NF4112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4112_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 431
Target Start/End: Original strand, 21098744 - 21099186
Alignment:
| Q |
1 |
caactatatatatcacctttgttttctcataagtatatccatctttttt-cttctatcacttttcc-----------aaaagcaatgaacaagtttaaga |
88 |
Q |
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| T |
21098744 |
caactatatatatcacctttgttttctcataattatatccatctttttttcttctatcacttttcccctcatttaccaaaaccaatgaacaagtttaaga |
21098843 |
T |
|
| Q |
89 |
aatctcaagtgctggtattatttgttctacttctttttcttgcttttatacctttattaccttcctctcttaaatctacctacttatatttcatctcaaa |
188 |
Q |
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|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
21098844 |
aatctcaagttctggtattatttgttctacttcttttccttgcttttatacctttattaccttcctctcttaaatctacctacttgtatttcatctcaaa |
21098943 |
T |
|
| Q |
189 |
cttcatcatcattgtacttgcttctgaagctggccttttttccctattatataagcctttagaagacaaaatacaatcttcttctcttatcaagaaacct |
288 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
21098944 |
cttcatcatcattgtacttgcttctgaagctggccttttttccctattatataagcctttagaagacaaaatgcaatcttcttctcttatcaagaaacct |
21099043 |
T |
|
| Q |
289 |
attacaccctcggacggatattccgagaaaaaagaagcccccattagttctatctcaaaacatgttgagaagaggcttaaacctgttgaaaagtcagcat |
388 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21099044 |
attacaccctcggacggatattccgagaaaaaagaagctaccattagttctgtctcaaaacatgttgagaagaggcttaaacctgttgaaaagtcagcat |
21099143 |
T |
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| Q |
389 |
ctgagactgagagggttgtttctttcaccaaagtggatatagt |
431 |
Q |
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| T |
21099144 |
ctgagactgagagggttgtttctttcaccaaagtggatatagt |
21099186 |
T |
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