View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4112_low_11 (Length: 251)
Name: NF4112_low_11
Description: NF4112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4112_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 41110693 - 41110772
Alignment:
| Q |
1 |
taaattacacgcggtatggtcggtcatgttgatttggtagaaag-aaagtccgtcgcatttagttgtaagtgccgtcgcg |
79 |
Q |
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| T |
41110693 |
taaattacacgcggtatggtcggtcatgttgatttggtagaaagaaaagtccgtcgcatttagttgtaagtgccgtcgcg |
41110772 |
T |
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Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 190 - 236
Target Start/End: Original strand, 41110883 - 41110929
Alignment:
| Q |
190 |
aatcaagatatcaaaccatacacatacacgtaagttagtgatgttat |
236 |
Q |
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| T |
41110883 |
aatcaagatatcaaaccatacacatacacgtaagttagtgatgttat |
41110929 |
T |
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